PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016193
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family LBD
Protein Properties Length: 189aa    MW: 19695.6 Da    PI: 10.8124
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-28556PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.23e-292103197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C++ Cvl+p++     +++q +++ +v+k+FG++ +l++++a+p+ +r+++++sl+yeA  r+ +Pv+Gavg++ +++++l+q++++++
  Sof016193   2 SCNGCRVLRKGCSEACVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPDAQRPALFQSLLYEAAGRTINPVHGAVGLLGTGNWHLCQAAVDTV 101
                6*********************9998656778***************************************************************99987 PP

     DUF260  96 ll 97 
                l+
  Sof016193 102 LR 103
                76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.8531107IPR004883Lateral organ boundaries, LOB
PfamPF031956.6E-252100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEACVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPDAQR  60
PALFQSLLYE AAGRTINPVH GAVGLLGTGN WHLCQAAVDT VLRGGAIGPL PELGITGSAG  120
NIYGPPAGGK RAGGWSTFST AXXVXXGRVF RRGGXRGTCX EXAPVEAGRX RTKAVPTKPG  180
SRQRWGGKG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.155150.0bud| crown| inflorescence| meristem| seed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983938.11e-89PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN115e-68LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A096QIL12e-86A0A096QIL1_MAIZE; Uncharacterized protein
STRINGSb01g031790.11e-83(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-69LOB domain-containing protein 37