PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof015481
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 198aa    MW: 20166.2 Da    PI: 10.6474
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17364072PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.5e-16119170256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                +y+GVr+++ +g+++ eIrdp  +g  +r +lg+f taeeAa a+++a+ +++g+
  Sof015481 119 HYRGVRRRP-WGKYAEEIRDPERDG--ARLWLGTFATAEEAATAYDRAAFRMRGA 170
                7********.**********85455..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-30118177IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-21119178IPR016177DNA-binding domain
CDDcd000186.90E-19119177No hitNo description
PROSITE profilePS5103223.604119177IPR001471AP2/ERF domain
PfamPF008471.4E-10119169IPR001471AP2/ERF domain
SMARTSM003801.6E-32119183IPR001471AP2/ERF domain
PRINTSPR003671.2E-10120131IPR001471AP2/ERF domain
PRINTSPR003671.2E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
XTPAPPASGA SASSYPRAGA GAGMGTSLSL ASAAAAAHGH GQYLPLNEDD SLDMVLFDVL  60
REASGSAAAP ATDQPPPSSL PTLKKALASG AAARKGGGVG GTNSSRAAHA PKAATTGRHY  120
RGVRRRPWGK YAEEIRDPER DGARLWLGTF ATAEEAATAY DRAAFRMRGA KALLNFPPGV  180
ASWRNAGVTP ASQNKLVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description