PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof015372
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 199aa    MW: 22353.4 Da    PI: 10.5419
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17250071PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.7e-163382255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr +k +g+WvAeIr+p +   r+r++lg++ ta  Aa+a++ a  +l+g
  Sof015372 33 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATAVAAARAYDTAVFYLRG 82
               69*****99.**********732...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-303291IPR001471AP2/ERF domain
SMARTSM003802.5E-363396IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-223392IPR016177DNA-binding domain
PfamPF008475.4E-103382IPR001471AP2/ERF domain
PROSITE profilePS5103222.7343390IPR001471AP2/ERF domain
CDDcd000183.93E-213391No hitNo description
PRINTSPR003674.7E-123445IPR001471AP2/ERF domain
PRINTSPR003674.7E-127292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
XVKMEAEQAA MAAAPQLGPA HQHHHQQMQP RRQYRGVRMR KWGKWVAEIR EPHKRTRIWL  60
GSYATAVAAA RAYDTAVFYL RGRSARLNFP DEIPSLALSE GGEPDTADGA GTLSAASIRK  120
KAIEVGSRVD ALQTGMMVPP PHHRERQRHH HHLPQLRVHA HAEEEXEQKP XPPQRPAWSG  180
RVKNPDLNRA PSPESSDAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-153295468ATERF1
3gcc_A2e-153295468ATERF1
5wx9_A6e-1533921474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.157080.0bud| inflorescence| leaf| seed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448639.27e-89ethylene-responsive transcription factor ERF008
TrEMBLA0A1B6PNK72e-87A0A1B6PNK7_SORBI; Uncharacterized protein
STRINGPavir.J27349.1.p1e-82(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.18e-32DREB and EAR motif protein 3