PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof013435
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 218aa    MW: 23757.2 Da    PI: 5.9499
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-119584PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-1754104155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                + ykGVr +   grWv+e+r+p   g r+r++lg+f tae+Aa+a++ a+++l+g
  Sof013435  54 PVYKGVRSRN-PGRWVCEVREP--HG-RQRIWLGTFETAEMAARAHDVAALALRG 104
                68****9666.9******9996..33.5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1254104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-3055114IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2055113IPR016177DNA-binding domain
SMARTSM003801.6E-2755118IPR001471AP2/ERF domain
PROSITE profilePS5103221.48355112IPR001471AP2/ERF domain
PRINTSPR003675.5E-85667IPR001471AP2/ERF domain
CDDcd000184.03E-1956114No hitNo description
PRINTSPR003675.5E-87894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDWAYYGGSG YSTTPSPSAG GVGGGDEDDA YMTVSSAPPK RRAGRTKFKE TRHPVYKGVR  60
SRNPGRWVCE VREPHGRQRI WLGTFETAEM AARAHDVAAL ALRGRAACLN FADSPRRLRV  120
PAQGAGHDEI RRAAVEAAEL FRPQQHNVGG SEAAVVAAPC AQGGGGLGGD FTYYPMDDGL  180
EFEMHGYLDM AQGMLIXPPQ PNAWIEDEYE CEVSLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-13531111271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.13251e-139crown| leaf| meristem| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446960.11e-118dehydration-responsive element-binding protein 1E
SwissprotA2XWL61e-102DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E
SwissprotQ8H2731e-102DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E
TrEMBLC5YE481e-117C5YE48_SORBI; Uncharacterized protein
STRINGSb06g025900.11e-118(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-39C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]
  2. Li S, et al.
    Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.
    Front Plant Sci, 2016. 7: p. 465
    [PMID:27148296]