PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof011076
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family LBD
Protein Properties Length: 243aa    MW: 26183 Da    PI: 8.4876
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17281579PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26067.14.1e-212921599
     DUF260 15 dCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99
                C+++p++     p++q++++ +++k++G++ +l+l++a+p++  r+++++sl+yeA+ r+ +PvyGavg++++++++++q+++e++l ++
  Sof011076  2 ACTIRPCLqwiksPDAQANATIFLAKFYGRAGLLNLIAAAPTDAlRPAVFRSLLYEACGRIVNPVYGAVGLLWSGTWHMCQAAVEAVLKGA 92
               6***********9***************************99988****************************************998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.695194IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-15288IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
XACTIRPCLQ WIKSPDAQAN ATIFLAKFYG RAGLLNLIAA APTDALRPAV FRSLLYEACG  60
RIVNPVYGAV GLLWSGTWHM CQAAVEAVLK GAPIVQVSPD DAAAYDIRHV FPKSSSSNKQ  120
SPAAAAPAQS KVDDKDKHTD RGLLHKVSKP KFKRTSSSPP SKKTKTTTQN NKPHLAAASP  180
ATEHHNDDDD DMLVADHSDE EVQHAALRQA SNSNAKSRRA SPDDCDRHSA SASLDTEEGR  240
SYV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.156790.0bud| callus| crown| leaf| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440381.11e-112hypothetical protein SORBIDRAFT_09g030780
SwissprotQ9ZW961e-54LBD40_ARATH; LOB domain-containing protein 40
TrEMBLC5YX261e-111C5YX26_SORBI; Putative uncharacterized protein Sb09g030780
STRINGSb09g030780.11e-111(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-54LOB domain-containing protein 41