PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof003701
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family LBD
Protein Properties Length: 237aa    MW: 24585.9 Da    PI: 7.508
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-7647PU_refplantGDBView CDS
gnl|UG|Sof#S17371117PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.23.1e-2927128197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C++ Cvl+p++     +++q +++ +v+k+FG++ ++++l+a+pe +r+++++sl+yeA  r+ +Pv+Gavg++ ++++q +q ++e++
  Sof003701  27 SCNGCRVLRKGCSDACVLRPCLqwidgAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRPAVFQSLLYEAAGRTINPVSGAVGLLGAGSWQPCQQAVETV 126
                6*********************9999888999****************************************************************9988 PP

     DUF260  96 ll 97 
                l+
  Sof003701 127 LR 128
                76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.426132IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-2427125IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAELQGXALG CMRGGPPGGE WVVPGMSCNG CRVLRKGCSD ACVLRPCLQW IDGAEAQGHA  60
TVFVAKFFGR AGLMSFLTAV PEPQRPAVFQ SLLYEAAGRT INPVSGAVGL LGAGSWQPCQ  120
QAVETVLRGG AIGPLPEFDV GRDTFALAAR RAVGCSTFST AKRAPTTTRT NVGTPPVPPP  180
EPSCELGLWL SPGSPPAPGE RRRPGTPSMT SEESVTTATT IGCCGGGREP ELLDLFV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.173420.0inflorescence| meristem| seed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460949.11e-123hypothetical protein SORBIDRAFT_02g038030
SwissprotQ9FN114e-66LBD37_ARATH; LOB domain-containing protein 37
TrEMBLC5XD461e-123C5XD46_SORBI; Putative uncharacterized protein Sb02g038030
STRINGSb02g038030.11e-123(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-62LOB domain-containing protein 37