PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002712
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 281aa    MW: 30862 Da    PI: 8.5193
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-97861PU_refplantGDBView CDS
gnl|UG|Sof#S17271320PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-19110159255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +++G+r+++ +g+W+AeIrdp     + +r++lg+f tae+Aa+a++a +++l+g
  Sof002712 110 QFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTAEDAARAYDAEARRLRG 159
                69*******.**********72....35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.4E-32109167IPR001471AP2/ERF domain
CDDcd000187.50E-28110169No hitNo description
PROSITE profilePS5103223.327110167IPR001471AP2/ERF domain
SMARTSM003807.8E-35110173IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22110168IPR016177DNA-binding domain
PRINTSPR003672.1E-11111122IPR001471AP2/ERF domain
PfamPF008471.7E-11111159IPR001471AP2/ERF domain
PRINTSPR003672.1E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MCGGAILAEL IPPTRRVASK PVTEGHLWPA SSKKAGIGSG SNKRHHHEYT DDDDFEAAFE  60
EFDDDFDAHE DDEDHPDNFV FSSKSAFSPA HDGRGARAAA TQRTKRGHRQ FRGIRQRPWG  120
KWAAEIRDPH KGTRVWLGTF NTAEDAARAY DAEARRLRGS KAKVNFPAAG ARARRGKGNP  180
RTAPKPQQHH AAAAQALPAL LLRGEKGQEG VAVKPETMDT FDVGSFFDMT FPTFPAVLXP  240
ALESSFAGSK GHVETWSPRE EAEIPKRVTC SEGHGRCLPA W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21109167463ATERF1
3gcc_A2e-21109167463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.190280.0crown| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313148.11e-123ethylene-responsive transcription factor 1-like
TrEMBLA0A1B6QQ351e-121A0A1B6QQ35_SORBI; Uncharacterized protein
STRINGSb01g045060.21e-122(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-20related to AP2 6