PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 96572
Common NameANT-1, SELMODRAFT_1154
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family AP2
Protein Properties Length: 180aa    MW: 20722.2 Da    PI: 10.1626
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
96572genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.41.7e-08251855
    AP2  8 wdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
           +++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  96572  2 RHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 51
           89************433.44555535555.779999**************98 PP

2AP250.55e-1694145155
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
            s y+GV++++++grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  96572  94 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 145
            57****************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.724159IPR001471AP2/ERF domain
CDDcd000181.24E-12261No hitNo description
Gene3DG3DSA:3.30.730.103.4E-10260IPR001471AP2/ERF domain
PfamPF008476.7E-6251IPR001471AP2/ERF domain
SMARTSM003802.3E-14265IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-12261IPR016177DNA-binding domain
SuperFamilySSF541711.44E-1894155IPR016177DNA-binding domain
PfamPF008471.3E-1094145IPR001471AP2/ERF domain
CDDcd000182.74E-2394155No hitNo description
Gene3DG3DSA:3.30.730.105.9E-1995153IPR001471AP2/ERF domain
SMARTSM003806.8E-3295159IPR001471AP2/ERF domain
PROSITE profilePS5103218.95395153IPR001471AP2/ERF domain
PRINTSPR003675.2E-596107IPR001471AP2/ERF domain
PRINTSPR003675.2E-5135155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
SRHRWTGRYE AHLWDNSCRK EGQTRKGRQG GYDKEEKAAR AYDLAALKYW GPTTTINFPL  60
SDYEKELEEM KHMTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD  120
LYLGTFSTQE EAAEAYDIAA IKFRGINAVT NFDISRYDLK KICSSPSLLL GETAKRYKDS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024538184.11e-124uncharacterized protein LOC9639077
SwissprotQ6PQQ41e-110BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLD8RL621e-132D8RL62_SELML; Uncharacterized protein ANT-1 (Fragment)
STRINGEFJ268611e-133(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-107AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  4. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  5. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  6. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  7. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  8. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  9. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]