PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 93509
Common NameSELMODRAFT_93509
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C2H2
Protein Properties Length: 146aa    MW: 16986.7 Da    PI: 10.2386
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
93509genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2219e-071638123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             ++C++Cgk F r  nL+ H r H
    93509 16 FVCEICGKGFQRDQNLQLHRRGH 38
             89*******************88 PP

2zf-C2H215.93.7e-0592114123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              +kC +C+k++  +s+ k H +t+
    93509  92 WKCDKCNKRYAVQSDWKAHSKTC 114
              58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.13E-81538No hitNo description
Gene3DG3DSA:3.30.160.602.7E-61638IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.00751638No hitNo description
PROSITE profilePS5015711.6141638IPR007087Zinc finger, C2H2
SMARTSM003550.0121638IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
SMARTSM003552405787IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-580113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.13E-887112No hitNo description
SMARTSM0035511092112IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
EVIALSPKTL MATNRFVCEI CGKGFQRDQN LQLHRRGHNL PWKLRQRTSK EPRKRVYVCP  60
EASCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCNKR YAVQSDWKAH SKTCGTREYR  120
CDCGTLFSRY SLAIQSISFY FFLAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-2288139354Zinc finger protein JACKDAW
5b3h_F5e-2288139354Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002970189.29e-96protein indeterminate-domain 2
RefseqXP_002978354.28e-96protein indeterminate-domain 2
SwissprotQ9LVQ72e-88IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLD8RHP21e-105D8RHP2_SELML; Uncharacterized protein (Fragment)
STRINGEFJ283191e-106(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.19e-91C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]