PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 92334
Common NameSELMODRAFT_92334
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 225aa    MW: 24725.5 Da    PI: 8.5026
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
92334genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-18655255
    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
           +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  92334  6 RYRGVRQRH-WGSWVSEIRHP-----LlkTRVWLGTFETAEDAARAYDEAARLMGG 55
           69******9.**********8.....334**********************97765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.04E-33565No hitNo description
PROSITE profilePS5103221.522663IPR001471AP2/ERF domain
SMARTSM003807.4E-39669IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-20664IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-33663IPR001471AP2/ERF domain
PfamPF008472.1E-11654IPR001471AP2/ERF domain
PRINTSPR003673.6E-11718IPR001471AP2/ERF domain
PRINTSPR003673.6E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010143Biological Processcutin biosynthetic process
GO:0010166Biological Processwax metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRPQRYRGV RQRHWGSWVS EIRHPLLKTR VWLGTFETAE DAARAYDEAA RLMGGPRART  60
NFPYDPNAPP HPSSSTLLST LSAKLNRCFS SSSSSSSCST DPHKKDPRVS QSLTCLRLDP  120
EQSNLGIWQK KSGRQPESNW VMKVHFGSQG GGGVSSDIVL PTDNPAPPQP IEHKKMKSEE  180
DLATEMIEEL LNFPDSSSPS SSTSSSEAKN PNFSSSDLLH HILV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-17563160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002969836.11e-165ethylene-responsive transcription factor WIN1
TrEMBLD8RG121e-164D8RG12_SELML; Uncharacterized protein
STRINGEFJ289601e-164(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.15e-40ERF family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]