PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 9104
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C2H2
Protein Properties Length: 85aa    MW: 9936.57 Da    PI: 10.6969
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
9104genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             + C++C+k F r  nL+ H r H
             89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.97E-61439No hitNo description
Gene3DG3DSA: finger C2H2-type/integrase DNA-binding domain
PfamPF121714.6E-61638IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8451638IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8772603e-08Selaginella moellendorffii zinc finger protein gene, partial cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365599.16e-57protein indeterminate-domain 1-like isoform X1
RefseqXP_028076239.12e-57zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9LVQ79e-54IDD1_ARATH; Zinc finger protein ENHYDROUS
SwissprotQ9SCQ66e-54IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2K1L2D81e-55A0A2K1L2D8_PHYPA; Uncharacterized protein
TrEMBLD8RTP83e-57D8RTP8_SELML; Uncharacterized protein (Fragment)
STRINGPP1S165_3V6.12e-56(Physcomitrella patens)
STRINGEFJ080776e-58(Selaginella moellendorffii)
STRINGEFJ247176e-58(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-56indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
  4. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273