PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 9042
Common NameSELMODRAFT_430854
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Dof
Protein Properties Length: 52aa    MW: 6124.82 Da    PI: 9.8277
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
9042genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof54.72.1e-17252349
  zf-Dof  3 ekalkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv 49
            ++  +cprC+s nt+f yynn   +    qPry C++C+  Wt+GG +r v
    9042  2 DNVYQCPRCQSYNTRFDYYNNEKSTgkrdQPRYACRSCKGKWTQGGKVRAV 52
            67789****************86533444*******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-8152IPR003851Zinc finger, Dof-type
PfamPF027012.8E-24252IPR003851Zinc finger, Dof-type
PROSITE profilePS5088415.417552IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 52 aa     Download sequence    Send to blast
PDNVYQCPRC QSYNTRFDYY NNEKSTGKRD QPRYACRSCK GKWTQGGKVR AV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002992665.13e-31uncharacterized protein LOC9630524
TrEMBLD8TAR07e-30D8TAR0_SELML; Uncharacterized protein
TrEMBLD8TAS02e-30D8TAS0_SELML; Uncharacterized protein (Fragment)
STRINGEFJ062501e-30(Selaginella moellendorffii)
STRINGEFJ062803e-31(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46590.15e-13Dof family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]