PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 84195
Common NameSELMODRAFT_84195
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 134aa    MW: 15285 Da    PI: 10.5983
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
84195genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+lv++++ +G g+W+ ++r  g+ R++k+c++rw +yl
            84195 14 KGLWSPEEDEKLVKCITTYGHGCWSNVPRLAGLERCGKSCRLRWKNYL 61
                     678*******************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-26664IPR009057Homeodomain-like
PROSITE profilePS5129425.06965IPR017930Myb domain
SMARTSM007174.1E-141363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
SuperFamilySSF466893.93E-211689IPR009057Homeodomain-like
CDDcd001678.55E-121761No hitNo description
Gene3DG3DSA:1.10.10.601.0E-66588IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MGRHSCCQKQ KLRKGLWSPE EDEKLVKCIT TYGHGCWSNV PRLAGLERCG KSCRLRWKNY  60
LRPDLKRGAF SLQEEKLIID LHAIVGNRLI FQDTMKLFQV SKQLLLEKLA KVSFLFQGGR  120
KSLHSSPAAP TMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-151288580B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002965929.14e-95hypothetical protein SELMODRAFT_84195
SwissprotQ8LPH63e-49MYB86_ARATH; Transcription factor MYB86
TrEMBLD8R3V34e-95D8R3V3_SELML; Putative uncharacterized protein
STRINGEFJ333491e-94(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.39e-52myb domain protein 55
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]