PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 80895
Common NameSELMODRAFT_80895
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 235aa    MW: 25532.9 Da    PI: 9.9503
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
80895genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.7e-20103153255
    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
            +y+GVr+++ +g+++AeIrd +++g  +r++lg+f taeeAa a+++a+ k++g
  80895 103 QYRGVRRRP-WGKFAAEIRDSTKQG--ARIWLGTFETAEEAAIAYDQAAFKMRG 153
            69*******.**********55444..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-31102161IPR001471AP2/ERF domain
SMARTSM003806.9E-37103167IPR001471AP2/ERF domain
PROSITE profilePS5103224.012103161IPR001471AP2/ERF domain
PfamPF008476.9E-14103153IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-23103163IPR016177DNA-binding domain
PRINTSPR003674.4E-11104115IPR001471AP2/ERF domain
CDDcd000183.19E-24111161No hitNo description
PRINTSPR003674.4E-11127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MESPVAAAWQ PSPKLSPCWG SKRINTGIPN HLFFLNENDS EEMPLYGLLK EAATRHPFDS  60
APTKIEAIQD VKPEPPVAVA MAAAAAPPAA VAPVQPASQP RRQYRGVRRR PWGKFAAEIR  120
DSTKQGARIW LGTFETAEEA AIAYDQAAFK MRGRRALLNF PLRLATPAAA AAARAESSSP  180
ESSVTSAIES QKERTRKRAR DSSLSQSSSK RQAPLVVEIQ EPDVDYMEQL LSGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-31102164466ATERF1
3gcc_A3e-31102164466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002963990.21e-167ethylene-responsive transcription factor 2
SwissprotO803382e-42EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLD8QYY81e-167D8QYY8_SELML; Uncharacterized protein
STRINGEFJ343231e-168(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.11e-21ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]