PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 78848
Common NameSELMODRAFT_78848
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 90aa    MW: 10467.1 Da    PI: 10.9175
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
78848genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.47e-181462148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                     +g+W +eEde+lv +++++G ++W++ +++   ++R++k+c++rw +yl
            78848 14 KGPWQPEEDEKLVAYIRKHGHENWRALPEKAAgLNRCGKSCRLRWTNYL 62
                     79*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-25865IPR009057Homeodomain-like
PROSITE profilePS5129422.469966IPR017930Myb domain
SMARTSM007172.8E-131364IPR001005SANT/Myb domain
PfamPF002497.0E-161462IPR001005SANT/Myb domain
SuperFamilySSF466891.3E-201589IPR009057Homeodomain-like
CDDcd001671.02E-91662No hitNo description
Gene3DG3DSA:1.10.10.601.8E-56689IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MRRPPRRNKE GLTKGPWQPE EDEKLVAYIR KHGHENWRAL PEKAAGLNRC GKSCRLRWTN  60
YLRPDIKRGG ITAQEEVLII WLHSILGNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-161289580B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002962620.14e-60hypothetical protein SELMODRAFT_78848
SwissprotQ7XBH44e-36MYB4_ORYSJ; Myb-related protein Myb4
TrEMBLD8QVL94e-60D8QVL9_SELML; Putative uncharacterized protein
STRINGEFJ360831e-59(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.19e-42myb domain protein 92
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]