PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 73232
Common NameABI4-1, SELMODRAFT_420500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 55aa    MW: 6556.4 Da    PI: 12.0802
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
73232genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18149355
    AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
           y+GVr+++ +grWvAeIr+p+    r +r++lg+f ta++Aa+a++ a+ +l+g
  73232  1 YRGVRQRS-WGRWVAEIREPR----RrTRVWLGTFATAQDAAQAYDMAAWRLYG 49
           9****999.**********83....35*********************988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-13149IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-20155IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-28155IPR001471AP2/ERF domain
PRINTSPR003673.4E-11112IPR001471AP2/ERF domain
PROSITE profilePS5103222.642155IPR001471AP2/ERF domain
SMARTSM003801.1E-24155IPR001471AP2/ERF domain
CDDcd000181.84E-22155No hitNo description
PRINTSPR003673.4E-112339IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 55 aa     Download sequence    Send to blast
YRGVRQRSWG RWVAEIREPR RRTRVWLGTF ATAQDAAQAY DMAAWRLYGS RAQLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19155661ATERF1
3gcc_A2e-19155661ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024541665.12e-32ethylene-responsive transcription factor ABI4
SwissprotO656651e-22ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLD8SC708e-32D8SC70_SELML; Uncharacterized protein ABI4-1
STRINGEFJ181411e-32(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.12e-19ERF family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]