PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 73225
Common NameSELMODRAFT_73225, WRKY_10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family WRKY
Protein Properties Length: 51aa    MW: 5707.66 Da    PI: 10.7842
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
73225genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY48.51.8e-152251836
           EEEEEE--TT-SS-EEEEEE-ST.T---EE CS
   WRKY  8 rKYGqKevkgsefprsYYrCtsa.gCpvkk 36
           rKYGqK++kgs++pr+YY+C+s  gCp++k
  73225 22 RKYGQKPIKGSPHPRGYYKCSSLrGCPARK 51
           9********************998****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-151151IPR003657WRKY domain
SMARTSM007742.8E-51851IPR003657WRKY domain
SuperFamilySSF1182901.06E-122251IPR003657WRKY domain
PfamPF031065.3E-122251IPR003657WRKY domain
PROSITE profilePS5081117.0752251IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 51 aa     Download sequence    Send to blast
VKRVINVPAV SNKIADIPQD ERKYGQKPIK GSPHPRGYYK CSSLRGCPAR K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002970478.13e-30hypothetical protein SELMODRAFT_73225, partial
SwissprotQ9SR076e-25WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLD8RGJ24e-30D8RGJ2_SELML; Putative uncharacterized protein WRKY_10 (Fragment)
STRINGEFJ286081e-29(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.14e-26WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]