PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 73225
Common NameSELMODRAFT_73225, WRKY_10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family WRKY
Protein Properties Length: 51aa    MW: 5707.66 Da    PI: 10.7842
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
73225genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY48.51.8e-152251836
           EEEEEE--TT-SS-EEEEEE-ST.T---EE CS
   WRKY  8 rKYGqKevkgsefprsYYrCtsa.gCpvkk 36
           rKYGqK++kgs++pr+YY+C+s  gCp++k
  73225 22 RKYGQKPIKGSPHPRGYYKCSSLrGCPARK 51
           9********************998****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-151151IPR003657WRKY domain
SMARTSM007742.8E-51851IPR003657WRKY domain
SuperFamilySSF1182901.06E-122251IPR003657WRKY domain
PfamPF031065.3E-122251IPR003657WRKY domain
PROSITE profilePS5081117.0752251IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 51 aa     Download sequence    Send to blast
VKRVINVPAV SNKIADIPQD ERKYGQKPIK GSPHPRGYYK CSSLRGCPAR K
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002970246.16e-26probable WRKY transcription factor 11
RefseqXP_002978404.16e-26probable WRKY transcription factor 11
RefseqXP_024531200.16e-26probable WRKY transcription factor 11
RefseqXP_024539193.16e-26probable WRKY transcription factor 11
SwissprotQ9SR079e-24WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLD8RGJ22e-28D8RGJ2_SELML; Uncharacterized protein WRKY_10 (Fragment)
STRINGEFJ286083e-29(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.14e-26WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]