PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 73165
Common NameSELMODRAFT_73143
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 56aa    MW: 6489.37 Da    PI: 11.3695
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
73165genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.2e-19150356
    AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
           ++GVr+++ +g+++AeIrdp++   + r +lg+f tae+Aa a++ a+++++g+
  73165  1 FRGVRRRP-WGKFAAEIRDPKT---KERRWLGTFETAEDAAMAYDLAARAMRGA 50
           79******.**********954...4999***********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-12149IPR001471AP2/ERF domain
PROSITE profilePS5103222.392156IPR001471AP2/ERF domain
PRINTSPR003673.5E-10112IPR001471AP2/ERF domain
CDDcd000186.30E-24156No hitNo description
SMARTSM003801.8E-27156IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22156IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-30156IPR001471AP2/ERF domain
PRINTSPR003673.5E-102339IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 56 aa     Download sequence    Send to blast
FRGVRRRPWG KFAAEIRDPK TKERRWLGTF ETAEDAAMAY DLAARAMRGA DARTNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21156662ATERF1
3gcc_A5e-21156662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for correct embryo patterning and cotyledon organogenesis. May regulate positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16339853, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016732853.11e-28PREDICTED: ethylene-responsive transcription factor ESR2-like
SwissprotQ9FYK56e-27ESR2_ARATH; Ethylene-responsive transcription factor ESR2
TrEMBLD8S4V12e-31D8S4V1_SELML; Uncharacterized protein (Fragment)
STRINGEFJ204923e-32(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-18ERF family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  3. Thoma R,Chandler JW
    Polarity in the early floral meristem of Arabidopsis.
    Plant Signal Behav, 2015. 10(4): p. e992733
    [PMID:25806573]
  4. Comelli P,Glowa D,Chandler JW,Werr W
    Founder-cell-specific transcription of the DORNRÖSCHEN-LIKE promoter and integration of the auxin response.
    J. Exp. Bot., 2016. 67(1): p. 143-55
    [PMID:26428063]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  7. Durán-Medina Y,Serwatowska J,Reyes-Olalde JI,de Folter S,Marsch-Martínez N
    The AP2/ERF Transcription Factor DRNL Modulates Gynoecium Development and Affects Its Response to Cytokinin.
    Front Plant Sci, 2017. 8: p. 1841
    [PMID:29123539]