PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 73164
Common NameSELMODRAFT_73164, SELMODRAFT_73169
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 56aa    MW: 6446.24 Da    PI: 11.3294
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
73164genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.32.8e-21149355
    AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
           y+GVr+++ +g+W+AeIrd+s    r  r++lg+f+tae Aa+a+++a+++++g
  73164  1 YRGVRQRP-WGKWAAEIRDFS----RgIRVWLGTFDTAEAAAEAYDRAARRMKG 49
           9*******.**********73....36*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-30156IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21156IPR016177DNA-binding domain
SMARTSM003802.6E-29156IPR001471AP2/ERF domain
PRINTSPR003673.6E-12112IPR001471AP2/ERF domain
PfamPF008479.9E-15149IPR001471AP2/ERF domain
CDDcd000181.12E-15156No hitNo description
PROSITE profilePS5103222.774156IPR001471AP2/ERF domain
PRINTSPR003673.6E-122339IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 56 aa     Download sequence    Send to blast
YRGVRQRPWG KWAAEIRDFS RGIRVWLGTF DTAEAAAEAY DRAARRMKGP SAQTNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-21156359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-21156662ATERF1
3gcc_A9e-21156662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024528845.12e-32ethylene-responsive transcription factor CRF4-like
RefseqXP_024536720.13e-32ethylene-responsive transcription factor CRF4-like
SwissprotO825035e-23CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLD8RBQ53e-32D8RBQ5_SELML; Uncharacterized protein (Fragment)
STRINGEFJ228094e-33(Selaginella moellendorffii)
STRINGEFJ308314e-33(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.18e-19cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]