PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 73160
Common NameSELMODRAFT_15839
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 57aa    MW: 6874.75 Da    PI: 10.412
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
73160genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2698.4e-22150356
    AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ kl+ge
  73160  1 YRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAYAYDQAAYKLRGE 50
           9******9.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-32157IPR001471AP2/ERF domain
CDDcd000186.55E-19157No hitNo description
SuperFamilySSF541715.49E-24157IPR016177DNA-binding domain
SMARTSM003801.0E-29157IPR001471AP2/ERF domain
PRINTSPR003679.1E-12112IPR001471AP2/ERF domain
PfamPF008472.0E-15150IPR001471AP2/ERF domain
PROSITE profilePS5103223.393157IPR001471AP2/ERF domain
PRINTSPR003679.1E-122339IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
YRGVRQRHWG KWVAEIRLPR NRTRLWLGTF DTAEDAAYAY DQAAYKLRGE YARLNFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21157663ATERF1
3gcc_A1e-21157663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504059.14e-35ethylene-responsive transcription factor ERF060
SwissprotQ8H1E44e-34RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLD3YBE77e-34D3YBE7_TRIRP; Dehydration responsive element binding protein
TrEMBLD8RKX46e-34D8RKX4_SELML; Uncharacterized protein (Fragment)
STRINGEFJ275231e-34(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.17e-26ERF family protein
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  5. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  6. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]