PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 73138
Common NameSELMODRAFT_73135, SELMODRAFT_73138
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 62aa    MW: 7246.06 Da    PI: 10.5281
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
73138genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP270.53e-22555155
    AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
           s+y+GVr+++ +g+W+AeIrd +     + +r +lg+++taeeAa a+++ ++ l+g
  73138  5 SKYRGVRQRP-WGKWAAEIRDpF-----KgTRLWLGTYDTAEEAAIAYDKKARDLRG 55
           89********.**********55.....45**********************99997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.5E-15555IPR001471AP2/ERF domain
CDDcd000183.36E-28562No hitNo description
SuperFamilySSF541715.75E-24562IPR016177DNA-binding domain
SMARTSM003803.6E-29662IPR001471AP2/ERF domain
PROSITE profilePS5103223.011662IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-32662IPR001471AP2/ERF domain
PRINTSPR003672.3E-12718IPR001471AP2/ERF domain
PRINTSPR003672.3E-122945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
RSQQSKYRGV RQRPWGKWAA EIRDPFKGTR LWLGTYDTAE EAAIAYDKKA RDLRGDNAQT  60
NF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21262162ATERF1
3gcc_A2e-21262162ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024532031.13e-37uncharacterized protein DDB_G0271670-like
SwissprotP930078e-26EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLD8QWU41e-37D8QWU4_SELML; Uncharacterized protein (Fragment)
STRINGEFJ275312e-38(Selaginella moellendorffii)
STRINGEFJ352952e-38(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.13e-28ERF family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]