PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 73136
Common NameSELMODRAFT_73132, SELMODRAFT_73136
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 62aa    MW: 7188.23 Da    PI: 10.4627
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
73136genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.31e-14552153
    AP2  1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkl 53
           ++y+GVr ++  g+WvAe   ++  +g  +r +lg+f ++e Aa a+++a  + 
  73136  5 KKYRGVRLRS-FGKWVAE---FCRpDG--QRLWLGTFHSPESAAMAYDQALVES 52
           69*****999.9******...766665..********************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.56E-18562No hitNo description
SMARTSM003804.0E-17662IPR001471AP2/ERF domain
PROSITE profilePS5103218.518662IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-23662IPR001471AP2/ERF domain
PfamPF008475.8E-11648IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-17662IPR016177DNA-binding domain
PRINTSPR003674.4E-8718IPR001471AP2/ERF domain
PRINTSPR003674.4E-82844IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
RSKEKKYRGV RLRSFGKWVA EFCRPDGQRL WLGTFHSPES AAMAYDQALV ESHGPLHKLN  60
FP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024524498.11e-39ethylene-responsive transcription factor ERF026-like
SwissprotQ9SW632e-16RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLD8QYZ24e-39D8QYZ2_SELML; Uncharacterized protein (Fragment)
STRINGEFJ312786e-40(Selaginella moellendorffii)
STRINGEFJ343276e-40(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.19e-19related to AP2 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]