PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 71417
Common NameSELMODRAFT_71417
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family NAC
Protein Properties Length: 179aa    MW: 20973.1 Da    PI: 10.4344
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
71417genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.41e-4711254128
    NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktL 106
            GfrFhPtdeelv +yL++k+++k +++ +vi+ +diy+++Pw+Lpk    +e+ wyfF+ rd+k +++ r+nr+tksg+Wkatg d+++ +  +++ vglkktL
  71417   1 GFRFHPTDEELVGFYLRRKIQDKAFPF-QVITPLDIYNYDPWELPKLSVCGENAWYFFCLRDHKFRNSLRPNRITKSGFWKATGPDRPISTVeTSSCVGLKKTL 103
            9**************************.99***************75556899************************************98756777******* PP

    NAM 107 vfykgrapkgektdWvmheyrl 128
            vfykgra k++kt+Wvmhe+rl
  71417 104 VFYKGRATKATKTEWVMHEFRL 125
            ********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100551.5911168IPR003441NAC domain
SuperFamilySSF1019414.05E-511168IPR003441NAC domain
PfamPF023657.7E-271125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
GFRFHPTDEE LVGFYLRRKI QDKAFPFQVI TPLDIYNYDP WELPKLSVCG ENAWYFFCLR  60
DHKFRNSLRP NRITKSGFWK ATGPDRPIST VETSSCVGLK KTLVFYKGRA TKATKTEWVM  120
HEFRLPTIGS SAQGSCEVRK KSFFSLILPR NDFSVQQESW SVCRIFRKRW SPRKNSASD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-45117420171NO APICAL MERISTEM PROTEIN
1ut4_B1e-45117420171NO APICAL MERISTEM PROTEIN
1ut7_A1e-45117420171NO APICAL MERISTEM PROTEIN
1ut7_B1e-45117420171NO APICAL MERISTEM PROTEIN
3swm_A1e-45117423174NAC domain-containing protein 19
3swm_B1e-45117423174NAC domain-containing protein 19
3swm_C1e-45117423174NAC domain-containing protein 19
3swm_D1e-45117423174NAC domain-containing protein 19
3swp_A1e-45117423174NAC domain-containing protein 19
3swp_B1e-45117423174NAC domain-containing protein 19
3swp_C1e-45117423174NAC domain-containing protein 19
3swp_D1e-45117423174NAC domain-containing protein 19
4dul_A1e-45117420171NAC domain-containing protein 19
4dul_B1e-45117420171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002961966.21e-114putative NAC domain-containing protein 94 isoform X1
SwissprotQ9FIW58e-68NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLD8QRD11e-130D8QRD1_SELML; Uncharacterized protein (Fragment)
STRINGEFJ372261e-131(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.13e-70NAC domain containing protein 94
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]