PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 69727
Common NameSELMODRAFT_59730, SELMODRAFT_69727
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 73aa    MW: 8482.76 Da    PI: 12.0807
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
69727genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21.1e-091462348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                     +WT  E   lvd+v + G+g W+ I r        Rt+ ++k++w+++l
            69727 14 PWTLREVMALVDGVSRCGTGKWADIKRLAFsaiAYRTPVDLKDKWRNLL 62
                     8****************************99**99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-14565IPR009057Homeodomain-like
PROSITE profilePS5129413.124766IPR017930Myb domain
SMARTSM007171.2E-71164IPR001005SANT/Myb domain
CDDcd116608.38E-201363No hitNo description
SuperFamilySSF466893.66E-181372IPR009057Homeodomain-like
PfamPF002491.9E-71462IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
TDRKSGSRRK HHRPWTLREV MALVDGVSRC GTGKWADIKR LAFSAIAYRT PVDLKDKWRN  60
LLRASRVHSH SSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002966506.19e-47hypothetical protein SELMODRAFT_69727, partial
RefseqXP_002982347.19e-47hypothetical protein SELMODRAFT_59730, partial
TrEMBLD8R5S29e-47D8R5S2_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ165923e-46(Selaginella moellendorffii)
STRINGEFJ325333e-46(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.18e-23TRF-like 6
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]