PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 69413
Common NameSELMODRAFT_69413
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 78aa    MW: 8701.08 Da    PI: 10.0116
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
69413genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.8e-201565155
    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
           ++y+GVr +  +g+Wv+eIr+p++   ++r++lg+f t+e+Aa+a++aa ++l+g
  69413 15 KKYRGVRMRT-WGKWVSEIREPTT---QARIWLGSFATPEMAARAYDAAVLYLKG 65
           69*****998.**********965...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.01E-271577No hitNo description
PfamPF008471.5E-121665IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-201677IPR016177DNA-binding domain
PROSITE profilePS5103222.0621675IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-291677IPR001471AP2/ERF domain
SMARTSM003801.2E-271677IPR001471AP2/ERF domain
PRINTSPR003673.3E-101728IPR001471AP2/ERF domain
PRINTSPR003673.3E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MIDHPMPGCG EASKKKYRGV RMRTWGKWVS EIREPTTQAR IWLGSFATPE MAARAYDAAV  60
LYLKGASALP ALNFQDSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-151274162ATERF1
3gcc_A3e-151274162ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024539551.16e-52ethylene-responsive transcription factor ERF034-like
SwissprotO221742e-23ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLD8QRF52e-51D8QRF5_SELML; Uncharacterized protein (Fragment)
STRINGEFJ372423e-52(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.17e-26DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]