PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 62212
Common NameSELMODRAFT_62212, SELMODRAFT_62214
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 591aa    MW: 63541.4 Da    PI: 7.1424
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
62212genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.7e-09249269526
              --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
              +C++f++ G C++Gd+C +aHg
    62212 249 PCPDFRK-GACRRGDTCEYAHG 269
              8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002043.08E-121118No hitNo description
SuperFamilySSF484038.08E-144121IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.2E-144122IPR020683Ankyrin repeat-containing domain
PfamPF127966.6E-85108IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0014373IPR002110Ankyrin repeat
PROSITE profilePS5029714.10643123IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.28678113IPR002110Ankyrin repeat
SMARTSM002482.878110IPR002110Ankyrin repeat
SMARTSM003566.3E-6244270IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-6249269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638249271IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4249271IPR000571Zinc finger, CCCH-type
SMARTSM0035644279302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
LLELAANNDL ETFRRVVEEG GMDLDEPDSW YLRKIGSTKM ATEKRSPLMI AALYGSIDVL  60
SYILKSGKVD VNKFCGEDEV TALHCAAAGG SSRGVDAVKL LLSGGANSSL MDAYGRRPAQ  120
VIAVPLKLRS TKSELEKMLS ATGFVSMSSM SSVCSSPDSY SPVFSPQFPS SPKSAENPSD  180
EKTKDYPVDP SLPDIKNSIY TTDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  240
RRFHYSCVPC PDFRKGACRR GDTCEYAHGV FECWLHPAQY RTRLCKDGTS CSRRVCFFAH  300
TSEEMRPLFV SMGSAVPSPR ASSPLDAGSV SPPLSSTSQS PVIMVPPFSP SNASGSGLST  360
PPLSPSGGGS WSQPTVPTLH LPGGAGLQAS RLRAALSARD IPVEGADYDG HLAPELSSMS  420
RQSSLLSSSA RMHKFGNLGL SIPSTSLQDL FSAEVSPLSA VHQSQLTPQE HSLLSQQLHS  480
QLQLQQLLSP LCSDGTDLST STAAEVLAAG RKASAFAQRD RGSWSMKEVS GSSLPSASWS  540
DWGSPTGKPD WGIQGQDLGK FRKSASFATH GGPEPDLSWV QTLVKDGPVE T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002971283.10.0hypothetical protein SELMODRAFT_62214, partial
RefseqXP_002961529.10.0hypothetical protein SELMODRAFT_62212, partial
SwissprotP937551e-180C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLD8QRK00.0D8QRK0_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ278810.0(Selaginella moellendorffii)
STRINGEFJ367890.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-142CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]