PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 61520
Common NameSELMODRAFT_61520
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family LBD
Protein Properties Length: 107aa    MW: 11508.5 Da    PI: 8.4116
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
61520genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.89.3e-302102196
  DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
             +C++C+vlr++C+++Cvl++++     p++q +++ +v+k+FG++ ++ l++++pe++r+++++sl+yeA+ r+ +Pv Gavg++ +++++ +q ++e++l
   61520   2 SCNGCRVLRKGCSDGCVLRQCLrwiesPDAQGHATVFVAKFFGRAGMMALISSVPESQRPALFQSLLYEACGRTINPVFGAVGLLCSGSWKHCQDAVETVL 102
             6*************************99******************************************************************9999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.9181107IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-252100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDGCVLR QCLRWIESPD AQGHATVFVA KFFGRAGMMA LISSVPESQR  60
PALFQSLLYE ACGRTINPVF GAVGLLCSGS WKHCQDAVET VLKGGLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002964328.22e-73uncharacterized protein LOC9654262
SwissprotQ9SN234e-58LBD38_ARATH; LOB domain-containing protein 38
TrEMBLD8QYR28e-73D8QYR2_SELML; Uncharacterized protein (Fragment)
STRINGEFJ346611e-73(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-60LOB domain-containing protein 38
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]