PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 49296
Common NameSELMODRAFT_49296, SELMODRAFT_49297
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 61aa    MW: 6785.77 Da    PI: 10.481
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
49296genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.81e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+  l  +v+++G+g W++I r          R+  ++k++w+++
            49296  5 KQKWTAEEECALRAGVEKYGPGKWRAIQRDPKfgpalVARSNVDLKDKWRNL 56
                     79****************************9999***9************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.029161IPR017930Myb domain
SuperFamilySSF466891.0E-16256IPR009057Homeodomain-like
SMARTSM007173.5E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-16556IPR009057Homeodomain-like
PfamPF002491.3E-9556IPR001005SANT/Myb domain
CDDcd116601.63E-19656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MGAPKQKWTA EEECALRAGV EKYGPGKWRA IQRDPKFGPA LVARSNVDLK DKWRNLSVSS  60
G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002983713.11e-38hypothetical protein SELMODRAFT_49296, partial
RefseqXP_002989044.11e-38hypothetical protein SELMODRAFT_49297, partial
SwissprotQ8W1193e-28SMH4_MAIZE; Single myb histone 4
TrEMBLD8SKD81e-38D8SKD8_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ098384e-38(Selaginella moellendorffii)
STRINGEFJ152094e-38(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-26telomere repeat binding factor 1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]