PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 443461
Common NameSELMODRAFT_443461
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 1387aa    MW: 154399 Da    PI: 9.07
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
443461genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.6e-192171256
     AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
            +++GVr ++ +gr++AeIrd ++    + r++lg+f+taeeAa+a+++a+++l+g+
  443461 21 HFRGVRKRP-WGRYAAEIRDpWK----KVRVWLGTFDTAEEAARAYDNAARALRGA 71
            69*******.**********883....5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-302077No hitNo description
PfamPF008471.4E-112170IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-202178IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-302178IPR001471AP2/ERF domain
SMARTSM003806.7E-362184IPR001471AP2/ERF domain
PROSITE profilePS5103222.5892178IPR001471AP2/ERF domain
PRINTSPR003671.6E-92233IPR001471AP2/ERF domain
PRINTSPR003671.6E-94460IPR001471AP2/ERF domain
SuperFamilySSF6448402541383No hitNo description
Gene3DG3DSA:3.90.1100.104.4E-83266440No hitNo description
PfamPF045633.4E-51272660IPR007644RNA polymerase, beta subunit, protrusion
CDDcd0065302731382IPR015712DNA-directed RNA polymerase, subunit 2
PfamPF045612.2E-23442620IPR007642RNA polymerase Rpb2, domain 2
Gene3DG3DSA:3.90.1110.101.3E-50443609IPR007642RNA polymerase Rpb2, domain 2
Gene3DG3DSA:3.90.1100.104.4E-83610760No hitNo description
PfamPF045655.8E-10696749IPR007645RNA polymerase Rpb2, domain 3
PfamPF045662.4E-23786845IPR007646RNA polymerase Rpb2, domain 4
PfamPF045674.4E-14868908IPR007647RNA polymerase Rpb2, domain 5
Gene3DG3DSA:3.90.1100.104.4E-83910985No hitNo description
PfamPF005621.6E-1219151290IPR007120DNA-directed RNA polymerase, subunit 2, domain 6
Gene3DG3DSA:2.40.270.105.1E-589861000IPR007120DNA-directed RNA polymerase, subunit 2, domain 6
Gene3DG3DSA:2.40.50.1503.2E-2510011131IPR014724RNA polymerase Rpb2, OB-fold
Gene3DG3DSA:2.40.270.105.1E-5811321268IPR007120DNA-directed RNA polymerase, subunit 2, domain 6
PROSITE patternPS01166011381150IPR007121RNA polymerase, beta subunit, conserved site
PfamPF045607.5E-3112921382IPR007641RNA polymerase Rpb2, domain 7
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009561Biological Processmegagametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0032549Molecular Functionribonucleoside binding
Sequence ? help Back to Top
Protein Sequence    Length: 1387 aa     Download sequence    Send to blast
MAPRKGVAAA AAGKQQDQGA HFRGVRKRPW GRYAAEIRDP WKKVRVWLGT FDTAEEAARA  60
YDNAARALRG AKAKTNFSTM SPSLYPGGAG GGGGGGGGAG MGGGDDRQST SHSSTVESYN  120
TPTPVVKKNK AAVVAAAAAA AVDTMTMTIN NTSNCYTSSC GNHRAGMVEN GDFTKNVIAS  180
TVKNSNKRIF QPASHTLKDF KATAAICLYK EEEEEKITNP SPQHHKNTMR KSFFQEPRDY  240
LLTRRSYAGL DAPVKTAVDK FQLLPAFHKV RGLVKQHLDS YNYFVNCEIK KIIHAKGNEK  300
ITSDVDPNFY IKYACDTFQY FTNILFRFLD IFVGTPSIEQ DYIRQDITPQ QCRLRDMTYS  360
APISVDIEYT RGKDIITRKG KDGQGAQVIG RMPVMLRSSR CILTGKSDAE LAKLGECPLD  420
PGGYFVVKGT EKVILIQEQL SKNRIIIDSD STGSVTASVT SSTHERKSKT NIIIKHEKIY  480
VKLNVFSDDV PIVVVMKAMG MESDQEIIQM VGTDPKFAGI LAPSMQECAS LGVYTTHQAL  540
EYLGTKVRVN RQWGSKQTKS KVDEARDILL NVFLAHVAVH RYDFRPKCIY VALMLRRMLE  600
AILDKECVDD RDYVGNKRLE LAGQLLALLF EDLFKRSCSE LKSNVDRTLS KMNRASQYDV  660
SKSLKPDMLT SGLENAISSG NWTVKRFRMD KKGVTQVVSR LSYIAALGHM TRVASQFEKS  720
RKWGMLCPCD TPEGEGCGLT KNLALMTHIT TDDEEAPLID LCTNLGVEDI NLLSGEEFHS  780
KNAFLVMFNG TILGIHRRPQ QFATLMRKLR RAGKIGEFVS IFVNEKQRCI YIASDGGRVC  840
RPVVIADHGV SRIKEHHMKE LKDGFRTFDD FLREGLVEYL DVNEENNALI ALYEKEADST  900
TTHIEIEPFT ILGVCAGLIP YPHHNQSPRN TYQCAMGKQA MGNIAYNQLQ RIDTLLYLLV  960
YPQRPLLTTK SIELVNYDKL GAGQNASVAV MSYSGYDIED AIVMNKASLD RGFGRCIVLK  1020
KFSCLVRKYE NRTMDRIVAP RQHGHATSQL LDQDGIASVG ERIYDKDIFV NKESPKDVKT  1080
TFLNPLALPD SAYRPTPQRY KGPLGESAIV DKVLLTTNES QQMVIKCQVR HTRRPELGDK  1140
FSSRHGQKGV CGTIVEQQDF PFTERGVCPD LIMNPHGFPS RMTVGKMIEL LGGKAGVQSG  1200
KYHYGSAFGE PSGHADTVEA ISATLVKHGF SYCGKDLIYS GITGCPLQAY IYMGPIYYQK  1260
LKHMVLDKMH ARAQGPRVVL TRQPTEGRSR EGGLRLGEME RDCLVAYGSS MLILERLMIS  1320
SDQFQVQVCT NCGLLGYYSH KLKMNFCSYC KNGENMAAMK LPYACKLLFQ ELQSMNIVPR  1380
LQLAEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fj8_B0.0223138561145DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2
5fj9_B0.0223138561145DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2
5fja_B0.0223138561145DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2
6cnb_B0.0223138561145DNA-directed RNA polymerase III subunit RPC2
6cnc_B0.0223138561145DNA-directed RNA polymerase III subunit RPC2
6cnd_B0.0223138561145DNA-directed RNA polymerase III subunit RPC2
6cnf_B0.0223138561145DNA-directed RNA polymerase III subunit RPC2
6eu0_B0.0223138561145DNA-directed RNA polymerase III subunit RPC2
6eu1_B0.0223138561145DNA-directed RNA polymerase III subunit RPC2
6eu2_B0.0223138561145DNA-directed RNA polymerase III subunit RPC2
6eu3_B0.0223138561145DNA-directed RNA polymerase III subunit RPC2
6f40_B0.0223138561145DNA-directed RNA polymerase III subunit RPC2
6f41_B0.0223138561145DNA-directed RNA polymerase III subunit RPC2
6f42_B0.0223138561145DNA-directed RNA polymerase III subunit RPC2
6f44_B0.0223138561145DNA-directed RNA polymerase III subunit RPC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol III is composed of mobile elements and NRPC2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft. {ECO:0000250|UniProtKB:P22276}.; FUNCTION: Essential for the completion of the three rounds of mitosis in female megaspores required for the development of mature gametophytes (PubMed:18723889). {ECO:0000269|PubMed:18723889}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024537768.10.0DNA-directed RNA polymerase III subunit 2 isoform X2
SwissprotF4KD380.0NRPC2_ARATH; DNA-directed RNA polymerase III subunit 2
TrEMBLD8S1N70.0D8S1N7_SELML; DNA-directed RNA polymerase subunit beta
STRINGEFJ217360.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.13e-22ERF domain protein 12
Publications ? help Back to Top
  1. Herr AJ,Jensen MB,Dalmay T,Baulcombe DC
    RNA polymerase IV directs silencing of endogenous DNA.
    Science, 2005. 308(5718): p. 118-20
    [PMID:15692015]
  2. Onodera Y, et al.
    Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation.
    Cell, 2005. 120(5): p. 613-22
    [PMID:15766525]
  3. Onodera Y, et al.
    Sex-biased lethality or transmission of defective transcription machinery in Arabidopsis.
    Genetics, 2008. 180(1): p. 207-18
    [PMID:18723889]
  4. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]