PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 443366
Common NameSELMODRAFT_420254, SELMODRAFT_443366
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 183aa    MW: 21331.7 Da    PI: 10.4054
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
443366genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.64.2e-1081121451
     AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
             +GV+++    +W A I++      +k+++lg+  t eeAa ++++a+ 
  443366  81 RGVYFKN--LKWQAAIKVG-----KKQVHLGTVNTQEEAAHLYDRAAY 121
             9**9965..5********4.....6********************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.9E-479136IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-880124IPR016177DNA-binding domain
PfamPF008472.2E-481122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-786126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MVSIRKRKHL SEKCRLQQAS NKCSENVEPL ALAMYRPDGT DEYIGKPPPL AFKTPFKDKE  60
LKKRKLHRRK QVNNQEPCML RGVYFKNLKW QAAIKVGKKQ VHLGTVNTQE EAAHLYDRAA  120
YMCGREPNFQ LTDEEKQELQ SFEWEEFLAL TRKAIAHKKM QNKLEAQMRR RQAAMAVKTE  180
QS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15763DKELKKR
25864KELKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002976991.11e-135ethylene-responsive transcription factor-like protein At4g13040 isoform X2
RefseqXP_002980728.11e-135ethylene-responsive transcription factor-like protein At4g13040 isoform X2
SwissprotQ56XP96e-42ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLD8S0S41e-133D8S0S4_SELML; Uncharacterized protein
STRINGEFJ183791e-134(Selaginella moellendorffii)
STRINGEFJ221011e-134(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP80221215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.14e-43ERF family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]