PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 442874
Common NameSELMODRAFT_442874
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HRT-like
Protein Properties Length: 685aa    MW: 77049.2 Da    PI: 10.3111
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
442874genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like24.16.3e-08651681231
  HRT-like   2 CGvile.dGsvCkrqPvkgRKRCeeHKGmRi 31 
               CGv  + dG  C+r+P  gRKRC  H  mR+
    442874 651 CGVVSKvDGVGCTRTPRNGRKRCDLHRRMRV 681
               9988755**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF055421.6E-2093174IPR008479Protein of unknown function DUF760
PfamPF055421.0E-17246329IPR008479Protein of unknown function DUF760
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009570Cellular Componentchloroplast stroma
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MACLQPACWL KPCVSSTSAS AISSLASWPD HNRAKQAWSS SRAFSAIGLW RSGRKHSSCA  60
AATSSASSGD ELTSSSASSA GNRSLSKTRR DMLLEYVQNV QPEFMELFIQ KAPQQVVEAM  120
RKTVTNMLGT LPPQFFEITI TTVAENLAQL MYSVLMTGYM FRNAQYRLEL QQSLEQAALP  180
APKDEKFGPE FESKVQKSQV QGSVLKWHKE DGPVAMDAVE YIEFLESEVE KLQQQLERGK  240
VSGQNELLDY LKNLEPKNLQ ELTTSAGEDA VEAMNTFVQR LIRISDAAML KRTATETSAK  300
ELARLLYWLM VVGYSIRNIE VRYDMERILG IPAKHPELPP GETIGRSMAS PCRMRREECF  360
AVKHDRYFTR WKILIGHSDW RDSVDSPSGS RYRLHNLPSK SAVRPGIYEL GIVRPCSSSR  420
KRKKKKRLHR RDVVAVYLGQ AENVRQRLQS YGQGGSHLEG WTGLEKWLPE KRVLTQIFRQ  480
GPRLFSEIFA RGYSLAFRWS ATGSKESALA AEKKLLHVFD YAWNKGANGA RRSLDVLTKL  540
EMQSNVVCGT RSSIATRLGC ARIFERRVGV RVELSKPKDR SEARSFRDVI RGFLGLSIDG  600
HEDHRKKEGD GVRPDDARKT SSSRKDCKVR IERAGTGKLY GEVTGENGLK CGVVSKVDGV  660
GCTRTPRNGR KRCDLHRRMR VIKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419423RKRKK
2420426KRKKKKR
3421426RKKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024536269.10.0uncharacterized protein LOC9630638 isoform X2
TrEMBLD8RWT90.0D8RWT9_SELML; Uncharacterized protein
STRINGEFJ231490.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.13e-44effector of transcription2
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]