PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 437976
Common NameSELMODRAFT_437976
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 1034aa    MW: 108953 Da    PI: 4.7304
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
437976genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92.1e-073467333
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...T CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg...k 33
                     +W t E++ lv av+++G+g+W+++a++++   k
           437976 34 AWGTLEELFLVSAVARHGTGDWSSVASELQarvK 67
                     79**************************995543 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.3E-43191IPR001005SANT/Myb domain
PfamPF002493.0E-63482IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-53466IPR009057Homeodomain-like
CDDcd001670.001573465No hitNo description
PROSITE profilePS500906.1683589IPR017877Myb-like domain
Gene3DG3DSA:1.20.920.105.6E-22631756IPR001487Bromodomain
SuperFamilySSF473703.4E-23638754IPR001487Bromodomain
SMARTSM002972.0E-26642753IPR001487Bromodomain
CDDcd043697.77E-21652748No hitNo description
PfamPF004397.6E-14658737IPR001487Bromodomain
PROSITE profilePS5001413.161664734IPR001487Bromodomain
PRINTSPR005036.1E-5681697IPR001487Bromodomain
PRINTSPR005036.1E-5697715IPR001487Bromodomain
PRINTSPR005036.1E-5715734IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1034 aa     Download sequence    Send to blast
MEDARILQQP PQPQILAQQE DECVAEASGS AVVAWGTLEE LFLVSAVARH GTGDWSSVAS  60
ELQARVKLLS LPSSSFSPEA CKSKFDALCG RYGGSGYCNG GNGREQYPSW FDDVRKRRMA  120
HLKRELEWHD GCIASLTNRL KRLKAERAQS LQVTSKQHAP EKPGAGLVEH TKPADQSAPE  180
SCVAQDGDVE VDKRNPPGGV GTEETGISES NEVSTVENDA KRDSMDEVKK YEETADGKPA  240
TEAMEDAKVA TDESAEVEAA DTEKASEAAV RDVDMEDQSH SAQKVEVVTD VDTEKRVEDI  300
DKVVADGSHE GMRQDEDETK PGGDDMVCLK NEADIGKSKK SERETASKEV VASDTELDDA  360
AQAPVKDGTC QDDGDGMEGD GKLTEVLSEE KRQAPAVEEK ETVEAVSSDV PGVEDMEDAK  420
VDKLPIVDQG EPSAIAAGDP KASADVTGSK EAVRASDGNF VGSASENTAV APTTVESGSE  480
MLLDTEGTKA SDEPLPVLST HVPEAEDVTK SEANQPADDD VVQVDGLVVD IVTEQPNARR  540
VSQDEKESSA SAAQHSSSTD VKPAADLNEK SDESQGGTRQ ADSVEKADNA VVSRASTQDV  600
GSPASVNEGS GSALEQSKDS RVERSDVGSQ ADGPEDSPTS RRTKNETAHI LKLQPLMNCL  660
RTISNHKQAS FFKQKQESQD DPRYAQVVRR HIDLNMIRAR LKEGAYSGSL EFFRDILLVF  720
NNCIVFYPRD SPEHSAAVVM RKLVMEEMDK LMQAEAGATK PDKAAPRKRD TKKPATALEN  780
CSTKATAATA VSTTPARQAS VPATTTPTTT TTTTTTGAVE NAASDNSRSK SASLSPGGGI  840
PSSKGGGEED DTREGGEPEV EGGKAKPLKA YGRKNRGAGG GGGAGGGGSS EHKSGKGVTR  900
EKPLDAIVKK IGKAEEAAAA AAAAVASKEK EKEKEKDKEE KKDRAKERKD SKASASNQDK  960
QSSSKKKGKG AAASVVKEKE SDGVAPTPSA TAATPAGGGG GATAATTAPV RGVRNKRSSA  1020
KDGQRPAAKR AKR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002962181.10.0hypothetical protein SELMODRAFT_437976
TrEMBLD8QSI20.0D8QSI2_SELML; Putative uncharacterized protein
STRINGEFJ374410.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP829569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.15e-21DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]