PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 431583
Common NameSELMODRAFT_431583
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HRT-like
Protein Properties Length: 533aa    MW: 60659 Da    PI: 10.5079
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
431583genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like24.54.7e-08499529231
  HRT-like   2 CGvile.dGsvCkrqPvkgRKRCeeHKGmRi 31 
               CGv  + dG  C+r+P  gRKRC  H  mR+
    431583 499 CGVVSKvDGVGCTRTPRNGRKRCDLHRRMRV 529
               9988755**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF055428.0E-9260IPR008479Protein of unknown function DUF760
PfamPF055427.1E-18136219IPR008479Protein of unknown function DUF760
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MLLEYVQNVQ PEFMELFIQK APQQVVEAMR KTVTNMLGTL PPQFFEITIT TVAENLAQLM  60
RHFRPPKTRR QDEMIFFGPE FESKVQKSQV QGSVLKWHKE DGPVAMDAVE YIEFLESEVE  120
KLQQQLERGK VSGQNELLDY LKNLEPKNLQ ELTTSAGEDA VEAMNTFVQR LIRISDAAML  180
KRTATETSAK ELARLLYWLM VVGYSIRNIE VRYDMERILG MPAKHPELPP GETIPSGSRY  240
RLHNLPSKSA VRPGIYELGI VRPCSSSRKR KKKKRLHRRD VVAVYLGQAE NVRQRLQSYG  300
QGGSHLEGWT GLEKWLPEKR VLTQIFRQGP RLFSEIFARG YSLAFRWSAT GSKESALAAE  360
KKLLHVFDYA WNKGANGARR SLDVLTKLEM QSNVVCGTRS SIATRLGCAR IFERRVGVRV  420
ELSKPKDRSE ARSFRDVIRR LFGLSIDGHE DHRKKEGDGV RPDDARKTSS SRKVCKVRIE  480
RAGTGKLYGE VTGENGLKCG VVSKVDGVGC TRTPRNGRKR CDLHRRMRVI KL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267271RKRKK
2268274KRKKKKR
3269274RKKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024522937.10.0protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLD8TD450.0D8TD45_SELML; Uncharacterized protein
STRINGEFJ054160.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.12e-34effector of transcription2
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]