PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 430108
Common NameSELMODRAFT_430108
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family B3
Protein Properties Length: 553aa    MW: 58530 Da    PI: 7.1748
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
430108genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.54.1e-121192296
            EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
             k+++++++     + +pk+  e+++    ++   ++  + g  W+v++    +s    +t+GWk+F+ +n +ke+D++vF++++ ++f   v +
  430108 11 TKIMKKAHMA---EMPIPKPVYEKYSTGALRG--TVILELGGSDWQVEV--GSGS----FTTGWKQFCLDNAIKENDSLVFHHQSARRF--SVEL 92
            5555444444...478*********5444444..555778*********..4444....89*********************7665555..6655 PP

2B338.42.2e-123564351298
             HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 l++p++fa+ h  + e  k+  + d++++ W v+    + ++r  +++GW  F+++++L+ +D++v+++ g+++   +v +f+
  430108 356 PCFYLSIPNEFAKVHL-P-EDLKEFDMVDSTNKAWGVRW--LGPPKRA-FSGGWCYFAQDHNLQLNDVCVLEMLGENR--VRVNIFK 435
             45679*******8883.3.45679***************..8888885.788********************887544..4788876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-13695IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.87796IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-15896IPR015300DNA-binding pseudobarrel domain
CDDcd100173.18E-12994No hitNo description
SMARTSM010191.8E-61096IPR003340B3 DNA binding domain
PfamPF023622.3E-101093IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-19338437IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-18338436IPR015300DNA-binding pseudobarrel domain
CDDcd100173.91E-21343435No hitNo description
PROSITE profilePS5086311.646345437IPR003340B3 DNA binding domain
SMARTSM010191.5E-6345437IPR003340B3 DNA binding domain
PfamPF023629.3E-11348436IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MAATNSRISF TKIMKKAHMA EMPIPKPVYE KYSTGALRGT VILELGGSDW QVEVGSGSFT  60
TGWKQFCLDN AIKENDSLVF HHQSARRFSV ELYSSDGSAK PGGGAKSSTS GGNALAEAME  120
KVIKECVVHL DEESSLKFVI SKVPRVVDVE VAEPSTPRKI VKAAGIGNGP SARTRSSPKT  180
APPPAAVARV ESRKKKKQPL PVSESDAEEE APPAKRARTE PSKRREVTRA STRRSLESGS  240
GSKGRPSRRK SKVVSKITAL EVRVDSTSTL PAAKQDDTPR ERKKVAKSGT AETKTGTAEK  300
KTRERRKTSS ARKSSSSRGK KQVVPAADSA ALAQAVAFKT SNPSTVIVMK KSNIAPCFYL  360
SIPNEFAKVH LPEDLKEFDM VDSTNKAWGV RWLGPPKRAF SGGWCYFAQD HNLQLNDVCV  420
LEMLGENRVR VNIFKADPKA AQGGGEAAAP PANPAANEGA GFEAAKEDGH GDVDGGDGGN  480
GGDGGGGGGG GGGERDLDAV VTGITGGSNR DEDGIAEEEA DDDEEGDDED YDPKEDDGGD  540
DGDGGDDKET WK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002991824.10.0B3 domain-containing protein Os11g0197600
TrEMBLD8T8C70.0D8T8C7_SELML; Uncharacterized protein
STRINGEFJ070860.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20511436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.18e-10B3 family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]