PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 428344
Common NameSELMODRAFT_428344
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 373aa    MW: 40324.1 Da    PI: 8.1631
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
428344genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.8e-20243293256
     AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
              ++GVr ++ +grW AeIrd       r r++lg+f+t+e+Aa+a++aa++kl+g+
  428344 243 VFRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTPEDAARAYDAAARKLRGA 293
             59*******.**********32....25**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-28242300IPR001471AP2/ERF domain
PROSITE profilePS5103221.983243300IPR001471AP2/ERF domain
SMARTSM003803.2E-32243306IPR001471AP2/ERF domain
PfamPF008471.8E-13243292IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-21243300IPR016177DNA-binding domain
CDDcd000185.57E-19244301No hitNo description
PRINTSPR003673.1E-9244255IPR001471AP2/ERF domain
PRINTSPR003673.1E-9266282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MALHEVLTGI KEEPRSFPSS PMLFDQDHCH DSFDHLLYAG GAAGSSSFNL RPAGRRRHDQ  60
EFCSQLDALA LDHNPCTSPI PSPGHSSNSS LDGIAAVVGQ RILFGGGGGA TADSTSSSSH  120
HHRHHHDHPV TPRYNAAATT NYRCSVPDSS RQDDMDLMVG QEHFSESHGH CFLDDHTFYG  180
SRRGHSELDL DRSLSSKRTS HTTIDSLAAA AAAAGYSLAS SSPDPPNGAA VSAATGAANP  240
GRVFRGVRKR PWGRWSAEIR DRIGRCRHWL GTFDTPEDAA RAYDAAARKL RGAKARTNFA  300
IPSSSGQPII PPAVSHHHHQ QQQQQSKCHG TNILLSSSSS SSGYQHQQHS YDLDLKLKLW  360
NSSNSSSSYR RS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-16241307370ATERF1
3gcc_A5e-16241307370ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002990097.10.0ethylene-responsive transcription factor ABR1
TrEMBLD8T2J20.0D8T2J2_SELML; Uncharacterized protein
STRINGEFJ091060.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-17ERF family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]