PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 425594
Common NameSELMODRAFT_425594
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Dof
Protein Properties Length: 252aa    MW: 28010.9 Da    PI: 4.8022
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
425594genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof582e-1852116360
  zf-Dof   3 ekalkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv...PvGggrrknkk 60 
             ++  +cprC+s nt+f yynn   +    qPry C++C+  Wt+GG +r+v   P Gg +r  k+
  425594  52 DNVYQCPRCQSYNTRFDYYNNEKSTgkrdQPRYVCRSCKGKWTQGGKVRDVslsPTGGNKRTLKS 116
             67889****************86533444*********************977778888887665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-1051115IPR003851Zinc finger, Dof-type
PfamPF027019.3E-2752116IPR003851Zinc finger, Dof-type
PROSITE profilePS5088415.48255113IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MARGSKRSRE DDGIMVLTKK RRLRSERACK LTAQEVRDQN LYGVWEHHDL PDNVYQCPRC  60
QSYNTRFDYY NNEKSTGKRD QPRYVCRSCK GKWTQGGKVR DVSLSPTGGN KRTLKSHGGD  120
KITPVVQEVG EPSQVMGDCV AGFDQTTYWE QGHGVGDCAQ PLSHEAFDQN SYWELLPGLG  180
QGPVGDCVQE EFAQTSELGD GVFADQVSQE FVGGVQGGDV QTNCWGQPQE FNDVFLDIEG  240
FLADLPEIQA C*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002992665.11e-177uncharacterized protein LOC9630524
TrEMBLD8STL70.0D8STL7_SELML; Uncharacterized protein
STRINGEFJ122250.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.12e-13TARGET OF MONOPTEROS 6
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]