PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 424732
Common NameSELMODRAFT_424732
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family B3
Protein Properties Length: 193aa    MW: 22130.1 Da    PI: 9.9883
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
424732genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.8e-1880169299
             EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
             +k++++s+v+   +l+lp +fa++h  k  +++++tled++g++ e  +    ++++  l++GW++F  +++L++gD +vF+l++   ++l+v++fr+
  424732  80 VKTMLQSHVSGGFWLSLPLSFAKKHLPK--KDTMITLEDSDGQESESFY--LAYKNG--LSGGWRGFSIDHKLQDGDALVFELME--PTRLKVHIFRA 169
             699**********************533..6679********8888888..455544..9**********************976..7778****996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-2273169IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-2574169IPR015300DNA-binding pseudobarrel domain
CDDcd100176.69E-2977168No hitNo description
PROSITE profilePS5086312.01279170IPR003340B3 DNA binding domain
SMARTSM010192.8E-2279170IPR003340B3 DNA binding domain
PfamPF023625.2E-1780169IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MVSYEEERRR RVEENKKRLK ELGIAEISKE IAQQTTQRAS KNQDDEPRLP RRSFCSQEDR  60
MAAIEAAEKI QQSLDRPSTV KTMLQSHVSG GFWLSLPLSF AKKHLPKKDT MITLEDSDGQ  120
ESESFYLAYK NGLSGGWRGF SIDHKLQDGD ALVFELMEPT RLKVHIFRAA DYQRIQGKSI  180
TDKAQLAKRS RR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024515368.11e-117B3 domain-containing protein At3g19184
SwissprotQ69V362e-45Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLD8SQV91e-139D8SQV9_SELML; Uncharacterized protein
STRINGEFJ132351e-140(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-45B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]