PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 421405
Common NameDEL1-1, SELMODRAFT_421405
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family E2F/DP
Protein Properties Length: 489aa    MW: 53622.7 Da    PI: 7.8984
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
421405genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP642.1e-202793171
  E2F_TDP  1 rkeksLrlltqkflklleksee.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
             rkeksL+ll+++fl+l+  ++  + ++l+e+a +L    v  +rRRiYDi+N+Le+++++ +k+kn + w g
   421405 27 RKEKSLGLLCENFLSLYGAEQGtECISLDEAAFRL---GV--ERRRIYDIVNILESVEVLVRKAKNCYMWYG 93
             79****************99988************...**..****************************87 PP

2E2F_TDP726.7e-23165245171
  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
              r+eksL+ll+qkf++l+  s++++v+l+e+a+ L        + k+k+RR+YDi+NVL++l+liek     ++k++++w g
   421405 165 RREKSLGLLSQKFVQLFLISQTQVVSLDEAARVLFGGctdpsKLKTKVRRLYDIANVLTSLQLIEKthgteNRKPAFKWLG 245
              689*******************************777999**9*************************99999******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-232594IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.44E-132691IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.7E-252793IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.4E-182893IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.7E-25160246IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.3E-32165245IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.2E-20167245IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.99E-13167246IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MSDSCLDVEG FPVGLDTEMQ ALPAYNRKEK SLGLLCENFL SLYGAEQGTE CISLDEAAFR  60
LGVERRRIYD IVNILESVEV LVRKAKNCYM WYGFTRLPQA LKEMKQAALR EYGLDGWGSD  120
KHEEHPHDDS ALGTQESINM PDSSTACPYT ESYSFYKPKS KADCRREKSL GLLSQKFVQL  180
FLISQTQVVS LDEAARVLFG GCTDPSKLKT KVRRLYDIAN VLTSLQLIEK THGTENRKPA  240
FKWLGVRDNG KFKRVLFKKR QFRPCKPTDP FAANATKRQT LKRGAVPYEQ HHTGSTSLAC  300
NTSGHADGVA FVDASSYAAA SASAAPVTPA GFPYSMVHFG AAAAPCGWLH AWDGGGRDSC  360
SIMRELGAGL GGGYGTNSTT TSNQQQLQQC PLHFGIAAAM QYQNETLNGV LAHYVECWRS  420
MCFQGQQRGL DPTSCDSAFK KCSDLLQNLG LFSNIELGNG KLHSILVHSP REQPPDSKPS  480
VLPSSDPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-40272374228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002981896.10.0hypothetical protein SELMODRAFT_421405
TrEMBLD8SF630.0D8SF63_SELML; Putative uncharacterized protein DEL1-1
STRINGEFJ169890.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24741634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.16e-67DP-E2F-like 1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]