PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 421270
Common NameSELMODRAFT_421270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 629aa    MW: 70023.2 Da    PI: 8.1532
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
421270genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.2e-081031325
             S---SGGGGTS--TTTTT-SS-S CS
  zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
              + Cr+f+r G C++G  CkF H
   421270 10 PVVCRHFQR-GNCRFGLHCKFLH 31
             678******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.112734IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-5733IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-61031IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-51132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-51232IPR000571Zinc finger, CCCH-type
SuperFamilySSF693361.2E-10435499IPR002489Glutamate synthase, alpha subunit, C-terminal
Gene3DG3DSA:2.160.20.601.1E-10447500IPR002489Glutamate synthase, alpha subunit, C-terminal
PfamPF014932.2E-11447499IPR002489Glutamate synthase, alpha subunit, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0016491Molecular Functionoxidoreductase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MSTHTATPDP VVCRHFQRGN CRFGLHCKFL HQQVADPVSS PLQSNHNVHT SQTMLTRTAT  60
SGLRILETIA NTEGPLSTAP RVRAMPSSSS SEQQGNGDKG VLQEGETESA SPAQAEETEK  120
KFREDILRYT TLLERKTHRG VSVPSCSLAL LVEHIKRCSD ISLASKSWLY SMIDNIPIKP  180
CSASEQSECH LNEEEALLHY SRFTDEALSM LPNEQHKALA DLHISINKVK KPTEVCVAPA  240
LVQPHRRRPR KVKKVKKVKV TEAEEEAYFS CEELFEEDAT RLGLRLLHLQ LVAEYVTFMA  300
VTMYSYIKLK TARVNPLLDK LEAIKKELKK AVQDLNRATR LKFLELLRLY HIAGRPADSE  360
TSKISPKGEE LRSALFWILV QDLLMFGFPR EPASMALDAT KGEELRARFP GVRGLLAHLG  420
SEKLNDVIGR VCGRIAGSIA KAYGGHSSGQ SFECLLTPGM NIRLIGESND YVGKGMAGGE  480
LAIIPPEMTG FVPEDATIIH ASTELLEASS VHAERLCGRW YDRWLAYFLD EDDTVSPKVL  540
KGQVWEQQSN PRSPKLGRFS SEVLFRPARK ARDRRNEVLA TCLADASLIA DTAQCFSAHH  600
FACLVGLWYQ LARESGPKAC QTKEQRIV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245250RRRPRK
2246252RRPRKVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002981817.10.0hypothetical protein SELMODRAFT_421270
TrEMBLD8SEP80.0D8SEP8_SELML; Putative uncharacterized protein
STRINGEFJ169100.0(Selaginella moellendorffii)
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]