PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 421179
Common NameSELMODRAFT_421179
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 257aa    MW: 28526.3 Da    PI: 9.9933
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
421179genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-0768122447
                      S-HHHHHHHHHHHHHTTTT.............-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg.............tWktIartmgkgRtlkqcksrwqky 47 
                      WT eE +++++a k    +             ++++Ia+ +g +R+  q++ + qky
           421179  68 WTNEERQRFKKALKTDT-HfekilrfscsfgtDFAAIAKFVG-TRSSTQVRTHAQKY 122
                      *************9765.45889*******************.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.005164125IPR001005SANT/Myb domain
SuperFamilySSF466891.17E-765125IPR009057Homeodomain-like
PfamPF002494.1E-667122IPR001005SANT/Myb domain
CDDcd001672.94E-668122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MQAPRRQFLC PKFEIEPLDM AGSAMQMVPA PHLWMKQLLV LRAQGHQESL QSENKVKFSQ  60
RVSESRYWTN EERQRFKKAL KTDTHFEKIL RFSCSFGTDF AAIAKFVGTR SSTQVRTHAQ  120
KYYAKLIRDY KRSGKAQAAA ASGVKDKSGA ANARIATESS YIRNNACPQP FGELQATRDL  180
SASVPNWKSV RARDKVEEIA LSDEDEEDDT AAETLAVDTG GSGKSAVRSC KDSCGVHQKV  240
GDQAARKLSR AKCLMQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002981683.10.0hypothetical protein SELMODRAFT_421179
TrEMBLD8SE960.0D8SE96_SELML; Putative uncharacterized protein
STRINGEFJ171650.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1164447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.23e-07MYB_related family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]