PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 419617
Common NameSELMODRAFT_419617
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 613aa    MW: 70148.5 Da    PI: 9.8408
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
419617genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07507547144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +g W +eE e+l  +v  +G++ W++I++ +g  R   ++  ++
           419617 507 KGIWPPEEVERLQSLVLTHGKR-WTLISKLLG--RNKRNVATKY 547
                      5779******************.********9..6666666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500903.915424501IPR017877Myb-like domain
SMARTSM007171.5428503IPR001005SANT/Myb domain
SuperFamilySSF466891.03E-9483551IPR009057Homeodomain-like
SMARTSM007171.5E-5506555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-8506552IPR009057Homeodomain-like
PROSITE profilePS500906.481506553IPR017877Myb-like domain
PfamPF139214.1E-8510566No hitNo description
PROSITE profilePS500905.146555612IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MGERKRKRAK DPIEEKGDGT VEDCDRTGEL TGKNAGVNRQ SDEDAGVEIA EGKEKRSRRK  60
SKHPAPEESK NEDFEGEKER EEEEEEAGHE KKKRKRKHED KDLVEEKISD GKKKLDGHEK  120
TRKKNAGGGD REGGAAQISS KSTKHKEDAG VDVEKIAKED KKKKKKKKNV PGINVEEQEN  180
QPTVCDESEI REDSTKVPLE SEKNKKLEKK KREKRIASDD TADRKVSSDD QQRRKESRQE  240
NATANVDPVP SKRKRKKDKH AAALDDAESP EAGDDQEHQE PERKKKKKKF HAVDVAEEQE  300
NNSAACYEKK KRKKKLEVAE SQDDNKLKQR EDERGSSDKQ RKEKTKKAER PVSVETGGDL  360
HTCTKNLGNH AESTIRNEKI KKKVSFGAAV VLNEAATEKK VHFGGVELQP TVPNERPLCE  420
RRLKDPLYNK KFTEEEDEAI RQAVRQFAET KGLDLHETYK LYLDRETPEQ RRLGRELSKA  480
LVACLPERNP ISVKYRAESV LDIFGQKGIW PPEEVERLQS LVLTHGKRWT LISKLLGRNK  540
RNVATKYYYV NALQKRGKYS SEEIAKVTST VHNVLAEYAR LNVPRHREED IPWRSIAAKL  600
PGRPESHYRV LW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196KKRKRK
2232254RRKESRQENATANVDPVPSKRKR
3252257RKRKKD
4252258RKRKKDK
5281287ERKKKKK
6307315EKKKRKKKL
7308314KKKRKKK
8309313KKRKK
9339346QRKEKTKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002979951.10.0hypothetical protein SELMODRAFT_419617
TrEMBLD8S9I10.0D8S9I1_SELML; Putative uncharacterized protein
STRINGEFJ188210.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP53221418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.14e-13MYB_related family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]