PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 419297
Common NameSELMODRAFT_419297
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Dof
Protein Properties Length: 293aa    MW: 32149.5 Da    PI: 4.5207
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
419297genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof56.65.4e-1852116360
  zf-Dof   3 ekalkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv...PvGggrrknkk 60 
             ++  +cprC+s nt+f yynn   +    qPry C++C+  Wt+GG +r+v   P Gg +r  k+
  419297  52 DNVYQCPRCQSYNTRFDYYNNEKSTgkrdQPRYACRSCKGKWTQGGKVRDVslsPTGGNKRTLKS 116
             67889****************86533444*********************977778888887665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-1051115IPR003851Zinc finger, Dof-type
PfamPF027011.4E-2652116IPR003851Zinc finger, Dof-type
PROSITE profilePS5088415.33355113IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MARASKRSRE DDGIMVLKKK RRLRSERACK LTAQEVRDQN LYGVWEHHDL PDNVYQCPRC  60
QSYNTRFDYY NNEKSTGKRD QPRYACRSCK GKWTQGGKVR DVSLSPTGGN KRTLKSHGGD  120
KITPVVQEEF VGESSQVMGD CVAGFDQTTY WEQGHGLGDC AQPLSHEAFD QNSCWELLPA  180
LGQGPVGDCV QEVFAQASEL GDGVFADQVS QEFVGGVQAL GQGPVGDCVQ EVFAQTSELG  240
DGVFADQVSQ EFVGGVQGGD VQTNCWGQPQ EFNDVFLDIE GFLADLPEIQ AC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11622LKKKRRL
21721KKKRR
31722KKKRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002992665.11e-177uncharacterized protein LOC9630524
TrEMBLD8S8G70.0D8S8G7_SELML; Uncharacterized protein
STRINGEFJ194080.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.14e-13TARGET OF MONOPTEROS 6
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]