PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 415574
Common NameSELMODRAFT_415574
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 215aa    MW: 24627 Da    PI: 4.7937
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
415574genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.61.7e-14111154250
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaar 50 
             +y+GVr  k+  rW+AeIr p     +  +r++lg+++ aeeAa+a+++a+
  415574 111 RYRGVR--KRGERWAAEIRNP-----HarARVWLGTYDNAEEAARAYDRAA 154
             79***6..6679********8.....456********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-9111154IPR001471AP2/ERF domain
PROSITE profilePS5103219.862111167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-25111168IPR001471AP2/ERF domain
SMARTSM003804.1E-25111173IPR001471AP2/ERF domain
CDDcd000186.85E-24111169No hitNo description
SuperFamilySSF541712.48E-17111168IPR016177DNA-binding domain
PRINTSPR003675.2E-5112123IPR001471AP2/ERF domain
PRINTSPR003675.2E-5133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MENSAAAVDD IDHRELVEHY QDHGDVTREG KEEAAEQLPE LQGLESFEPW YFDKEFECSS  60
FSAPSPVHEL PGLDDAPTEA VESEPPKRRR SFSDYSHGSS RARQAMDRER RYRGVRKRGE  120
RWAAEIRNPH ARARVWLGTY DNAEEAARAY DRAAVGFKGI RAHLNFPDDP REQFEMFPQP  180
RDRAGEEMNM PPLQGISPTT MAQFQTWSPS EYLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-12112167360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-12112167663ATERF1
3gcc_A3e-12112167663ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024524543.11e-143ethylene-responsive transcription factor ERF112-like
TrEMBLD8RWJ81e-156D8RWJ8_SELML; Uncharacterized protein
STRINGEFJ236761e-157(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-09ethylene response factor 110
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]