PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 414369
Common NameSELMODRAFT_414369
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Dof
Protein Properties Length: 254aa    MW: 28301.3 Da    PI: 4.818
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
414369genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof574.2e-1852116360
  zf-Dof   3 ekalkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv...PvGggrrknkk 60 
             ++  +cprC+s nt+f yynn   +    qPry C++C+  Wt+GG +r+v   P Gg +r  k+
  414369  52 DNVYQCPRCQSYNTRFDYYNNEKSTgkrdQPRYACRSCKGKWTQGGKVRDVslsPTGGNKRTLKS 116
             67889****************86533444*********************977778888887665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-1051115IPR003851Zinc finger, Dof-type
PfamPF027011.1E-2652116IPR003851Zinc finger, Dof-type
PROSITE profilePS5088415.33355113IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MARASKRSRE DDGIMVLKKK RRLRSERACK LTAEEVRDQN LYGVWEHHDL PDNVYQCPRC  60
QSYNTRFDYY NNEKSTGKRD QPRYACRSCK GKWTQGGKVR DVSLSPTGGN KRTLKSHGGD  120
KITPVVQEEF VGESSQVMGD CVVGFDQTTY WEQGHGLGDC AQPISHEAFD QNSSWELLPA  180
LGQVPFGDCV QEVFAQASEL GDGVFADQVS QEFVGGVQGG DVQTNCWGQP QEFNDVFLDI  240
EGFLADLPEI QAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11622LKKKRRL
21721KKKRR
31722KKKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002992665.10.0uncharacterized protein LOC9630524
TrEMBLD8RSI50.0D8RSI5_SELML; Uncharacterized protein
STRINGEFJ250740.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69570.13e-13Dof family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]