PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 412693
Common NameSELMODRAFT_412693
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 268aa    MW: 27742.3 Da    PI: 10.5217
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
412693genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19142191356
     AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
             ++GVr ++ +grW AeIrd       r r++lg+f+t+e+Aa+a++aa++kl+g+
  412693 142 FRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTPEDAARAYDAAARKLRGA 191
             89******.**********32....25**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.8E-32141204IPR001471AP2/ERF domain
PROSITE profilePS5103221.997141198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-28141198IPR001471AP2/ERF domain
PfamPF008472.4E-13142190IPR001471AP2/ERF domain
PRINTSPR003671.8E-9142153IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-21142199IPR016177DNA-binding domain
CDDcd000181.15E-18142197No hitNo description
PRINTSPR003671.8E-9164180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MFCQRLTELI PALASLDRPS SPPLCKEEDV ASPAMELAMM AQWPSLSTAS VKDLDGIAAV  60
VGQRALFGGA SSSSSVSALN AGNGDGSSQA LSCDRRMQVP PLLEIAPLAI ASSSSSSPPP  120
EKSSSAPAGA SSSSISSSPR AFRGVRKRPW GRWSAEIRDR IGRCRHWLGT FDTPEDAARA  180
YDAAARKLRG AKARTNFSVP SSSIFPLPPL PHRPSTPSPS ISSRGAAPSS PALSWLDLKL  240
GSSGGSSSPK QRPSGGLPPT PSKLELD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-15135197871Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024532550.11e-177ethylene-responsive transcription factor 3
TrEMBLD8RL660.0D8RL66_SELML; Uncharacterized protein
STRINGEFJ268640.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.19e-18ERF family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]