PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 409864
Common NameSELMODRAFT_409864
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Dof
Protein Properties Length: 252aa    MW: 28061 Da    PI: 4.7133
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
409864genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof56.55.6e-1852116360
  zf-Dof   3 ekalkcprCdstntkfCyynny....slsqPryfCkaCrryWtkGGalrnv...PvGggrrknkk 60 
             ++  +cprC+s nt+f yynn     +  qPry C++C+  Wt+GG +r+v   P Gg +r  k+
  409864  52 DNVYQCPRCQSYNTRFDYYNNEkstgNRDQPRYACRSCKGKWTQGGKVRDVsqsPTGGNKRTLKS 116
             67889****************73333567*********************988899999998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-1051115IPR003851Zinc finger, Dof-type
PfamPF027012.2E-2652116IPR003851Zinc finger, Dof-type
PROSITE profilePS5088415.26855113IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MARGSKRSRE DDGIMVLTKK RRLRSERACK LTAEEVRDQN LYGVWEYHDL PDNVYQCPRC  60
QSYNTRFDYY NNEKSTGNRD QPRYACRSCK GKWTQGGKVR DVSQSPTGGN KRTLKSHGGD  120
KIAPVVQEEF VGESSQVMGD CVAGFDQTIY WEQSHGVSDC AQPFSHEGFD QNWKLLPGLG  180
QGPVGDCVQE VFAQTSELSD GVFADQVSQE FVGGVQGGDV QTSCWGQPQE FNDVFLDIEG  240
FLADLPEIQA C*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002992665.11e-172uncharacterized protein LOC9630524
TrEMBLD8RCQ40.0D8RCQ4_SELML; Uncharacterized protein
STRINGEFJ301770.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69570.12e-13Dof family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]