PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 409196
Common NameSELMODRAFT_409196
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 429aa    MW: 44886.7 Da    PI: 8.1995
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
409196genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.4e-1756107156
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
             +++ GVr+++ +grWvAeI+d +   ++ r +lg+f+ ae+Aa+a++ a+++l+g+
  409196  56 KKFVGVRQRP-SGRWVAEIKDST---QKLRLWLGTFDNAEDAARAYDDAARALRGA 107
             589*******.7*********32...36*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-1157106IPR001471AP2/ERF domain
PROSITE profilePS5103219.63857114IPR001471AP2/ERF domain
SMARTSM003801.6E-3357120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2757114IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-1957114IPR016177DNA-binding domain
CDDcd000186.60E-1558113No hitNo description
PRINTSPR003671.4E-65869IPR001471AP2/ERF domain
PRINTSPR003671.4E-68096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDSSTAAAAV SSILPGAGSS VGVTVAGSPT AEEDSSSSRK NSRSSSGGGS KQQQKKKFVG  60
VRQRPSGRWV AEIKDSTQKL RLWLGTFDNA EDAARAYDDA ARALRGANTR TNFKLPGNAS  120
GRFSKATRML LQRVAMRSSG SEALKENQAL IASDNNNPGA VAVAGAFPHG LYHAAGGSSS  180
DSSPMQSFSS QQVPGKDKLA AVDPGKSIAP RALQQHQFYG TSPFGGGFQS PALATQQQIH  240
SKSVYGAFIE KLGKVPRPPP PPPAKHDLPY VNGYHGPLMS ENERAPQETT MMMEFQDDQG  300
GSGGEDYIFK SYSATSSRFM SPSIRVPPSD RYKVAPSIHV YNTAAQAAAA AAADLSDSDA  360
LIQAPNIRGS ESPIILNKDD PMVSAVPAAA MAISSCDSVS PGPSTPSGEE EESSSFWSYF  420
DQALCAVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-12571131471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002968096.10.0ethylene-responsive transcription factor ESR1
TrEMBLD8RAN80.0D8RAN8_SELML; Uncharacterized protein
STRINGEFJ303500.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-11related to AP2 11
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]