PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 406795
Common NameSELMODRAFT_406795
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 472aa    MW: 52201.4 Da    PI: 8.6603
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
406795genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.1e-08371419348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v++ Ggg W+ I +        Rt+ ++k++w+++l
           406795 371 PWTLREVMILVEGVARCGGGKWADIKKLEFssvSYRTAVDLKDKWRNLL 419
                      8************************9876678989************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.478364423IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-13365421IPR009057Homeodomain-like
SuperFamilySSF466892.73E-16366435IPR009057Homeodomain-like
SMARTSM007172.2E-7368421IPR001005SANT/Myb domain
CDDcd116603.02E-20370420No hitNo description
PfamPF002494.4E-6371419IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MTPYLLLPPC DASRCAKKFT TTQTKGAVKR SGKKGDMEPS TSLPSCWIQR LGPVLSPGER  60
AGRQDRIRNE DDLIGGREKK GGKKDKSILD PKALAGTAHS FRDLEVILGS AARQVGDDGS  120
VLPSAEDDDL QVECFAEREN LHEIATLAVV KHGDDVSSRN VKEKAGVHST RGQEVLSNDE  180
TVHPSTVSGE VYFSVAARNV EGKRKRKPNR RYIEDETDNL YFTSELHRLV SDGTDSCDGA  240
KSHRDITEKL DSGSDIEYPE FESPTQAAVS YGGRRSSMMK LKAERKASKI ARLAWSSRKR  300
GPSIGSSKEK TMSSSDKESY SDLEGGMDQM LEDYEDVQSM GGEDCELDFS GEHVETVPTP  360
NGGTRRKHHR PWTLREVMIL VEGVARCGGG KWADIKKLEF SSVSYRTAVD LKDKWRNLLR  420
ASRVHFTSKQ QQFLVVIKGG AQQKETFCSF YTSTNSCSCT TSRSGRTLRR K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002965767.10.0hypothetical protein SELMODRAFT_406795
TrEMBLD8R2Y90.0D8R2Y9_SELML; Putative uncharacterized protein
STRINGEFJ331870.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-25TRF-like 6
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]