PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

406795

Common Name

SELMODRAFT_406795

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

MYB_related

Protein Properties

Length: 472aa MW: 52201.4 Da PI: 8.6603

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
406795	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.5	6.1e-08	371	419	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v++ Ggg W+ I + Rt+ ++k++w+++l 406795 371 PWTLREVMILVEGVARCGGGKWADIKKLEFssvSYRTAVDLKDKWRNLL 419 8**********************9876678989**********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.478	364	423	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.8E-13	365	421	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.73E-16	366	435	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-7	368	421	IPR001005	SANT/Myb domain
CDD	cd11660	3.02E-20	370	420	No hit	No description
Pfam	PF00249	4.4E-6	371	419	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MTPYLLLPPC DASRCAKKFT TTQTKGAVKR SGKKGDMEPS TSLPSCWIQR LGPVLSPGER 60 AGRQDRIRNE DDLIGGREKK GGKKDKSILD PKALAGTAHS FRDLEVILGS AARQVGDDGS 120 VLPSAEDDDL QVECFAEREN LHEIATLAVV KHGDDVSSRN VKEKAGVHST RGQEVLSNDE 180 TVHPSTVSGE VYFSVAARNV EGKRKRKPNR RYIEDETDNL YFTSELHRLV SDGTDSCDGA 240 KSHRDITEKL DSGSDIEYPE FESPTQAAVS YGGRRSSMMK LKAERKASKI ARLAWSSRKR 300 GPSIGSSKEK TMSSSDKESY SDLEGGMDQM LEDYEDVQSM GGEDCELDFS GEHVETVPTP 360 NGGTRRKHHR PWTLREVMIL VEGVARCGGG KWADIKKLEF SSVSYRTAVD LKDKWRNLLR 420 ASRVHFTSKQ QQFLVVIKGG AQQKETFCSF YTSTNSCSCT TSRSGRTLRR K*

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MTPYLLLPPC DASRCAKKFT TTQTKGAVKR SGKKGDMEPS TSLPSCWIQR LGPVLSPGER  60
AGRQDRIRNE DDLIGGREKK GGKKDKSILD PKALAGTAHS FRDLEVILGS AARQVGDDGS  120
VLPSAEDDDL QVECFAEREN LHEIATLAVV KHGDDVSSRN VKEKAGVHST RGQEVLSNDE  180
TVHPSTVSGE VYFSVAARNV EGKRKRKPNR RYIEDETDNL YFTSELHRLV SDGTDSCDGA  240
KSHRDITEKL DSGSDIEYPE FESPTQAAVS YGGRRSSMMK LKAERKASKI ARLAWSSRKR  300
GPSIGSSKEK TMSSSDKESY SDLEGGMDQM LEDYEDVQSM GGEDCELDFS GEHVETVPTP  360
NGGTRRKHHR PWTLREVMIL VEGVARCGGG KWADIKKLEF SSVSYRTAVD LKDKWRNLLR  420
ASRVHFTSKQ QQFLVVIKGG AQQKETFCSF YTSTNSCSCT TSRSGRTLRR K*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8R2Y9	0.0	D8R2Y9_SELML; Uncharacterized protein
STRING	EFJ33187	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1645	15	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	2e-25	TRF-like 6

Link Out ? help Back to Top
Phytozome	406795
Entrez Gene	9633982

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]