![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 406795 | ||||||||
Common Name | SELMODRAFT_406795 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 472aa MW: 52201.4 Da PI: 8.6603 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.5 | 6.1e-08 | 371 | 419 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v++ Ggg W+ I + Rt+ ++k++w+++l 406795 371 PWTLREVMILVEGVARCGGGKWADIKKLEFssvSYRTAVDLKDKWRNLL 419 8************************9876678989************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.478 | 364 | 423 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-13 | 365 | 421 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.73E-16 | 366 | 435 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-7 | 368 | 421 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.02E-20 | 370 | 420 | No hit | No description |
Pfam | PF00249 | 4.4E-6 | 371 | 419 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 472 aa Download sequence Send to blast |
MTPYLLLPPC DASRCAKKFT TTQTKGAVKR SGKKGDMEPS TSLPSCWIQR LGPVLSPGER 60 AGRQDRIRNE DDLIGGREKK GGKKDKSILD PKALAGTAHS FRDLEVILGS AARQVGDDGS 120 VLPSAEDDDL QVECFAEREN LHEIATLAVV KHGDDVSSRN VKEKAGVHST RGQEVLSNDE 180 TVHPSTVSGE VYFSVAARNV EGKRKRKPNR RYIEDETDNL YFTSELHRLV SDGTDSCDGA 240 KSHRDITEKL DSGSDIEYPE FESPTQAAVS YGGRRSSMMK LKAERKASKI ARLAWSSRKR 300 GPSIGSSKEK TMSSSDKESY SDLEGGMDQM LEDYEDVQSM GGEDCELDFS GEHVETVPTP 360 NGGTRRKHHR PWTLREVMIL VEGVARCGGG KWADIKKLEF SSVSYRTAVD LKDKWRNLLR 420 ASRVHFTSKQ QQFLVVIKGG AQQKETFCSF YTSTNSCSCT TSRSGRTLRR K* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | D8R2Y9 | 0.0 | D8R2Y9_SELML; Uncharacterized protein | ||||
STRING | EFJ33187 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1645 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72650.2 | 2e-25 | TRF-like 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 406795 |
Entrez Gene | 9633982 |
Publications ? help Back to Top | |||
---|---|---|---|
|