PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 405704
Common NameSELMODRAFT_405704
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family G2-like
Protein Properties Length: 355aa    MW: 38883.3 Da    PI: 8.8312
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
405704genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.98.3e-32220273255
  G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              +r+rWt++LH++Fv+ave+LGG+e+AtPkt+lelm+vk Ltl+hvkSHLQ+YR+
   405704 220 QRMRWTSNLHAHFVKAVERLGGHERATPKTVLELMNVKELTLAHVKSHLQMYRT 273
              8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.04E-14218273IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-28218273IPR009057Homeodomain-like
TIGRFAMsTIGR015576.8E-24220273IPR006447Myb domain, plants
PfamPF002491.3E-6221272IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEMPIRLLAP AEPDLSLRIS TPPAIRGGGS HHDGTSAFEI WKKSGGSSSS SDCSSSNYSP  60
RGEHHHLEAV EASTELSLGR SFLYRAHSGE IDHHHHHASM HAARSDRNSS IDGLFRIGMR  120
SSSPDGDHYP RQGIDFLSRA PAYGLRFAPV TEITQEHHDP APAVGNSNSH SGHCQEQQKK  180
IEKMGGSENS LRESIVVSAP SQQRSRIISK LPVKRSARAQ RMRWTSNLHA HFVKAVERLG  240
GHERATPKTV LELMNVKELT LAHVKSHLQM YRTVKTTDKA TLTEKNMEEM AEEAQSPNSS  300
SSGRDDWSNT RCNTNVRLVG QLEAGELGKH DELSSLGNLV PKRAAVAAVQ WLGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16221275458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16221275458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16221275357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16221275357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16221275357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16221275357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16221275458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16221275458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16221275458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16221275458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16221275458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16221275458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002964461.10.0probable transcription factor KAN2 isoform X1
TrEMBLD8QZF80.0D8QZF8_SELML; Uncharacterized protein
STRINGEFJ347940.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.28e-37G2-like family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]