PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 405683
Common NameSELMODRAFT_405683
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family G2-like
Protein Properties Length: 570aa    MW: 63894.2 Da    PI: 6.4085
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
405683genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like217.3e-076243755
  G2-like 37 kvkgLtlehvkSHLQkYRl 55
             +v+g+ + hvkSHLQkYRl
   405683  6 SVDGVNILHVKSHLQKYRL 24
             699***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-5625IPR009057Homeodomain-like
PfamPF143793.1E-1956101IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
SuperFamilySSF524022.56E-41224420No hitNo description
Gene3DG3DSA:3.40.50.6209.0E-58225375IPR014729Rossmann-like alpha/beta/alpha sandwich fold
CDDcd019994.88E-162226559No hitNo description
PfamPF007645.7E-79227435IPR001518Argininosuccinate synthase
PROSITE patternPS005640229237IPR018223Argininosuccinate synthase, conserved site
PROSITE patternPS005650332343IPR018223Argininosuccinate synthase, conserved site
Gene3DG3DSA:3.90.1260.105.4E-26376434IPR024074Argininosuccinate synthetase, catalytic/multimerisation domain body
SuperFamilySSF698643.53E-46387568No hitNo description
PfamPF007643.2E-26457562IPR001518Argininosuccinate synthase
Gene3DG3DSA:3.90.1260.101.9E-30458565IPR024074Argininosuccinate synthetase, catalytic/multimerisation domain body
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006526Biological Processarginine biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0004055Molecular Functionargininosuccinate synthase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MNTYSSVDGV NILHVKSHLQ KYRLVKDLPP SPVAKQQQSK QCSLELPSLN VETGLQITET  60
LRLQLEVQKQ LHEQLEIQRD LQKKIEDHGR YLERMYSKTE EATRSCHKNS DEPSPGPQEQ  120
EQRKHHQTCD DQIHQASGTT TSTADSFQPP LKKLKPSQEQ EELQPVGDED VDFSELWKVY  180
GMAALAPSSG SIAVAPRSRA AHFAQQSPAS RRILALSDQW QKLNKVVLAY SGGLDTSVIV  240
PWLRENYGCV CFTADVGQGL GELEWLEAKA KASGASQLII KDLKEEFVKD FIFPCLRAGA  300
VYERKYLLGT SMARPAMVDA AKEVGADAVS HGCTGKGNDQ VRFELTFFAL NPKLAVVAPW  360
REWDIKGRED AIEYAKKHNV PVPVTKKSIY SRDRNLWHIR HEGDILEDPA NEPKEDMFVM  420
TTNPEKAPDT PENLFVPEPR SVRDARWNHP EPSSAGAESL ALDRETMQMK DTMALKYAEL  480
VYAGRWFDPL RESLDAFMEK VTETTSGSVK QKLFKGSAVV ASRTSPFSLY RQDISSFEEG  540
SGIYNQGDAA GFIRLYGLPT RVRAMLLEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1j21_A1e-1082255662393Argininosuccinate Synthetase
1j21_B1e-1082255662393Argininosuccinate Synthetase
1j21_C1e-1082255662393Argininosuccinate Synthetase
1j21_D1e-1082255662393Argininosuccinate Synthetase
1kh1_A1e-1082255662393Argininosuccinate Synthetase
1kh1_B1e-1082255662393Argininosuccinate Synthetase
1kh1_C1e-1082255662393Argininosuccinate Synthetase
1kh1_D1e-1082255662393Argininosuccinate Synthetase
1kh2_A1e-1082255662393Argininosuccinate Synthetase
1kh2_B1e-1082255662393Argininosuccinate Synthetase
1kh2_C1e-1082255662393Argininosuccinate Synthetase
1kh2_D1e-1082255662393Argininosuccinate Synthetase
1kh3_A1e-1082255662393Argininosuccinate Synthetase
1kh3_B1e-1082255662393Argininosuccinate Synthetase
1kh3_C1e-1082255662393Argininosuccinate Synthetase
1kh3_D1e-1082255662393Argininosuccinate Synthetase
1kor_A1e-1082255662393Argininosuccinate Synthetase
1kor_B1e-1082255662393Argininosuccinate Synthetase
1kor_C1e-1082255662393Argininosuccinate Synthetase
1kor_D1e-1082255662393Argininosuccinate Synthetase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024524562.10.0LOW QUALITY PROTEIN: argininosuccinate synthase, chloroplastic
SwissprotQ9SZX30.0ASSY_ARATH; Argininosuccinate synthase, chloroplastic
TrEMBLD8QZD40.0D8QZD4_SELML; Uncharacterized protein
STRINGEFJ343880.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.15e-24phosphate starvation response 1
Publications ? help Back to Top
  1. Arabidopsis Genome Initiative
    Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
    Nature, 2000. 408(6814): p. 796-815
    [PMID:11130711]
  2. Dixon DP,Skipsey M,Grundy NM,Edwards R
    Stress-induced protein S-glutathionylation in Arabidopsis.
    Plant Physiol., 2005. 138(4): p. 2233-44
    [PMID:16055689]
  3. Ferrario-Méry S,Besin E,Pichon O,Meyer C,Hodges M
    The regulatory PII protein controls arginine biosynthesis in Arabidopsis.
    FEBS Lett., 2006. 580(8): p. 2015-20
    [PMID:16545809]
  4. Less H,Galili G
    Principal transcriptional programs regulating plant amino acid metabolism in response to abiotic stresses.
    Plant Physiol., 2008. 147(1): p. 316-30
    [PMID:18375600]
  5. Rutschow H,Ytterberg AJ,Friso G,Nilsson R,van Wijk KJ
    Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis.
    Plant Physiol., 2008. 148(1): p. 156-75
    [PMID:18633119]
  6. Hajduch M, et al.
    Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression.
    Plant Physiol., 2010. 152(4): p. 2078-87
    [PMID:20118269]
  7. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]